Pseudomonas fluorescens AU10414, AA048_RS16010

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU10414 Contig_3, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CATGCTGGTTCGCTAAGGGGCGTGACTGACTGGCCTGCCCAGACGCTCGGCGCAGGGTGTGCCGCGTGTGCGGGTCAGCCGGTATCAGGTGCTCGATGCG CAAGGAGGTCACCGTGACATCCTGCGGCCTGCCAAATGCTGTGAAGGTCGACAGGAAGTTCAGCTTGCCCTGTTGAGAGTTGACCCGCGTTATCACCCAC GGTGGCAGCTCATCGCTCAACACGTCCGGCATGGCAGGGGCGGGCAGTTGCTCCGGCAGGTGCGCCAATTCGCGATTGCCAAGGCTTTACGCGCAGCCCT TTGTCAGGCAACACGCCTGATTTCAGAGGCATTGATCCTAGTTTCGCGACATGCCCACAGATTTGCCTGATCAGGTCTTTCACGTAGCTGCCGCTGGAGC TGAGTGCCCCATATTTCGGATATCTTTTCGGAAATACCCTACATCCGATATGCCCCCCTTCGCAATAGACTGCCCACTCTGACCACAAGGAGTGAAACGT
DNA Sequence for Gene
>AA048_RS16010
ATGGCTAATCACAGCTACATGACCATTATCGGAAAAAAACAAGGTTTGATTTCCGCTGGTTGTTCCAGTCAGGACTCTATAGGGAACAAGTGCCAGGCTG GACATGAAGACGAAATTATGGTGCTGGCTTACTCTCATAATATGGCCGCTGGTAATGACGGAACCACGTCAGGTGGCCGTGGCAAACATATGCCCGTCGT TATTACAAAAAATATTGATAAATCTACGCCTTTGTTAGCTAGTGCTCTTCATGAAGGCGAAGAAGTTGAATGTAAAATTAACTTTTATCGAACCTCTCCT GCTGGCTTTCACGAAAAATATTTTACTGTAATGCTAGGTGGTGGCCGTATTGCCAATTTAAGCGTTCAAGTACCGCATGCCATTCATATGGGTGACGCGC AGCCACAGGAGTTTATGGCCATTAGATATCGTGAGATTAGCTGGGTACACCACCAAGCAAGTACAAGCGCCTATAGCTCTTGGGGGAACGAAGGTGAATG A
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGAGTCATGTGATATTCATGATGTAGCCAAAGCAGGTTCTGACCTAGTGGCATTAGGGTGTACGATTGGCGCTACGAATTTCTATGAAGGCTTTATGCAG CTTCAGTTCAGTTCAATTATCTCTCATTATGTGAGCGAAGTTATAAAGGATGTTAATGACGGTGTAATAAGTGCTTGGGAGGGAGTGAAAGAGATAAGGG ATGAATATGCTGACCTATCTTCCAAGGCCATTTTTTACGCTAAAAACGGCATCGGGGTTGTTGCCGGAGCCATGCAGGTTGAGGTTGGCATCACGGTTAC GGGGGCTTCATATGGTTTGGGGGCGCCAGTAGGTGCGTTTTTTATCGGACACGGCGTGAATAATATGTATGAAGGTGGGATGAATATCTATAACGGCCCT GATGGTCCGGCAGTACAGGGGCCTACTAGACGTGCCTATCAATTCTTTATGGGGGATGATTATAAAGGGGGTATGGCATATGGAACCATCGACTTAATTT
Amino Acid Sequence
>type VI secretion system protein
MANHSYMTIIGKKQGLISAGCSSQDSIGNKCQAGHEDEIMVLAYSHNMAAGNDGTTSGGRGKHMPVVITKNIDKSTPLLASALHEGEEVECKINFYRTSP AGFHEKYFTVMLGGGRIANLSVQVPHAIHMGDAQPQEFMAIRYREISWVHHQASTSAYSSWGNEGE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site