Pseudomonas fluorescens AU10414, AA048_RS00490
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU10414 Contig_11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATAGTTTTAGAAGCTTGCCGTTCTATTATGCAAGCACGGGGCGCTACCATGCATCGTGGTAATCGGTCTGAATTGGACTTTTCTAGGGTCTGCTAAAGG TCGGGCGAGCGCCAAAGGATAGTTTTAGAGATAGGCGAAAACTAATTTTAAAATAAGTCATTATAAATCATATACTTATAATACTTTTTGACTCCTGGTG CCACCATACGAAACACCGAAAGAGGCTCACTGCAAGGTGGGCCTTTTTTGTGTGTGCTGAAAAAACCCCATCGTACGGCCTTCCCTGCCTAGCGACCCGA GGCATTCCCTGTTGCCTGCAATCAGCCCGCTTGCGGATTCGCAGCGCCCTGCCCGTCATGTCCCGTAGTGAATGATTGCCATCATTCAACAGTGTTAATT AGCCATCATCTCCTTTAAGATCGCCGCGCTTTTGTGTGTGGCGCTTGGCCATCATTCGCTTTAAAAAGCACATGCATGGAAGCGCCTGGATTATCAGCCG
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| DNA Sequence for Gene |
>AA048_RS00490
ATGTTTAAGGAAGAATTTGTGTCCCCTGTTCTATTCCGTAAAAGCCTACTTGCTCTCGCCATCACGACCTGTGCCCTGCCTGTTCATGCGCAAACGCTGC AACTGACCGATGCCGGCCTGACCCTCGAACGCCAGCAGTTCAGCGAAAACGTCGAAATCACCGGGTCGATGAATCACGCCCAAGAGGGTGTGGACGCGCT TCATATCCTGGGTTCGGACTTCGCCAAAGACCTGGTTTTCAACGCCACGATTACTTCAAGCAATAGCTCGGGTGGCGGTATCGACATGGACAGTTGGTAC AACCCCAACCCGTCGAACGGCGACGTGATGTGGGCTAACAACACGGTTGGCGGCAACCTGATCAATAAAGGCAGTGTCAGCTCCCAAGGCAATGGCGCAA CCGCGTGGTTGATTGATCCGGCCGTGGTGGGCGGTGATGTCATCAACGAAGGGTTGTTGAGCGCTAAAGGCGAACCGGATGTGGGCGAGGACGACCGTGA CGTCTCACGGGCTGCGTATATTTCTGGCTCGACGCATATCAACGGTGATTTCAAAAACACCGCCTCGGGCAAGATCATTGCTGAAGGCACCGATGCCAAA GCCTTTCAGATGGAAGGCGGCCAGCTGGACGGCCGATTCATCAACAACGGCCTGATTCAAGTGACCGGTGTCGGCAGCACCGCCGTTGATGTGACCAGCT CCGAGCGCTGGAACGGCGTGAGTAATGTCAACGACCGCGCCGATGTACGCGGGATCGAGAACAACGGCACCATCATTGCCATGGGCGAAGATGCCGAAGG CATTCGCGCCGACGGCGTCAGCTTCGCCAGCGAGCAAGCGCACATCGTTAACAACGGCCTGATTCAGACCCAAGACGCCGCCATTGTGATCGGCGGTTTT GATATCGATGGCATCAATCAGGGCGGCGCGCTGAAGGTTGTCAACAACGGCACCCTCTTGTCCCAGGACGAAGCGGTAGATGCGTCGGAAAGCGATGGCC GCGTGTACCTGACACTGGCTGACGGCAGCAAGACCACCGGCAACCTGATCGATCTGAGCATGATCGAAGTGACCGGCAACGCTGCGTTCACGGGCACCGA CACCACGGCTGACGGCGCCAACATCCGCATGAAAAATAATGGCTGGGTGGATGTCGGCAGCGCGTCGTCGCCCGCGCACCTGGACCTCGGCCTGCCTCAC ACCACGCTGGACGGCAACCTGTACGTTGCTGGCAATTCGTCGCTGGGGCTGAACCTGAGCGCTGCCACCGATGCCCGCCGCCCAGTACTGGCGGTCAGTG GTACGGCTGAATTCGGCAAAGGTTCGCAGATCCAGCTGGCCGCCAAAGGCAATGATTTCCGCACCGATGGCACCACCTACACGCTGGTGCAAGCCAATGA CCTGCAAGACAACGGGTTGACCGTCACCAGCAGTTCGTCGCTGCTGAATGTCGACAGCTACGTGGTCGAGAACAACCAGATTGTGAGCAAGGTCACTGCC AAAGGCGCGGCGGAAGTGGGCAATGTCATCGCTGACATCGGCGGCTCGCACAATGCGCAACAAGCGGGCGCCGCGTTCACCGAAGTCACTCGCCAATTGG CCATGCTGAGCCCGCAAGACCCGCTGTTCCAGCACTATGTCAACGCGTCCAATAACCCTGAAGCGCTGAAAAAACTGGCGGAACAACTGGCGCCTGACGT GAACGGCGGCGCAACCCAAGCGGCGACCACCAGCCAGACCCTGATCAGCAACGTGACGGGCAACCGTACCGGCGGCGGACGCGGCCTGTCTTCAGGTGAC ACGCTCAAGGAAACCGGCGTTTGGGTGCAAACCCTGTACAGCGATGCCAACCAGGACATGCGCGATGGCGTGGCCGGGTTTAATGCGTACAGCCGCGGGA TCGCGGTCGGTGCGGACGGCAAGCTCAACGATCAACTGACGCTGGGTCTGGCGTACAGCTACCTGAACACCGATGTGAATGGCAAGGCAGGCAGCAAGAC TGAAGTCGACAGCCACGCTTTCACGCTGTACGGCGGTTTTGAGCAAGGCAATTACTTCGTTGACGCTGCGCTGACGTACGGCATGAACGACAACGACAGC CAGCGCAACATCGGTAACACCAAAGCCAAGGCCGACTACGACAGCAACCTGTTCGGCGTGAACCTGGTGGGCGGTTACACCTACCACATCACGCCCGACC TGCTGATCGAGCCACGCATCGCTGCGCGCTACAGCCTGGTGGACATCGATGGCTACCGCGAAAAAGGTTCGTCGGCTGCCTTGAAGGTCAAGGATCAGCG CTACGAAGTGGCCGAGCTGGGCGCAGGGTTCCGGGTCGCGGCCAGCTATCCGCTGGGTCAGGGCACCCTCACGCCACAGGCCAAGTTGATGGCGTTCCAC GATTTTGCCGCTGACGAAGCCAGCAGCACGTCGACCTTCACCCTCGGCAACACGCCGTTCGTCACCAGCGGCGCTGGCGCTGTGCGTAACAGCTACGAAG CCGGTATCGGTGCCGATTACCGTCTGGGTGCCGTGACGCTGGGCCTGAATTACGACTATGTCGGCAAATCAGGTTTCGACGCCGATACGTTCTCGGCCAA AGTGCGTTACGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGAAGCCTTCAGGCCCCAACCCGCGCTCGCGGGTCGGTGTCTGGCCGTGGGGCATGGCGCTGTGTATCAGCGCCCTGCTCGGCGGTTGTCAGACGCCACT TCAGACGTTGCAGGAACAGGCTTCACGCCATCAGCAACGGCTTGAAGTTATCCACACCCCACATTTCCCGCTGATGGTGGCCTTGCCTTCGTCAGCCCCC GTTTCGTCGCGCATTCGCGTGTACCTGGAAGGTGACGGCCATGCCTGGGCAACGTCACGTCAGCCCAGCCTGGACCCCAGCCCTCACGACCTGATGATGG CTCGCCTTGCGTTCAGCGATCCCGTGCCGAGTGTGTATCTGGCCCGGCCGTGTCAGTTTGTCAGCGCCCGCGCCTGCACGCCGGTGATGTGGACGGACCG CCGTTTCAGCCCCGAGGTGCTGTCGAGCCTCGATCAGGCGCTGGATCAGATCAAGGCACGGCTGGGCAATCAGGCGTTTGAGTTGGTGGGCTATTCAGGC
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| Amino Acid Sequence |
>exoprotein with autotransporter
MFKEEFVSPVLFRKSLLALAITTCALPVHAQTLQLTDAGLTLERQQFSENVEITGSMNHAQEGVDALHILGSDFAKDLVFNATITSSNSSGGGIDMDSWY NPNPSNGDVMWANNTVGGNLINKGSVSSQGNGATAWLIDPAVVGGDVINEGLLSAKGEPDVGEDDRDVSRAAYISGSTHINGDFKNTASGKIIAEGTDAK AFQMEGGQLDGRFINNGLIQVTGVGSTAVDVTSSERWNGVSNVNDRADVRGIENNGTIIAMGEDAEGIRADGVSFASEQAHIVNNGLIQTQDAAIVIGGF DIDGINQGGALKVVNNGTLLSQDEAVDASESDGRVYLTLADGSKTTGNLIDLSMIEVTGNAAFTGTDTTADGANIRMKNNGWVDVGSASSPAHLDLGLPH TTLDGNLYVAGNSSLGLNLSAATDARRPVLAVSGTAEFGKGSQIQLAAKGNDFRTDGTTYTLVQANDLQDNGLTVTSSSSLLNVDSYVVENNQIVSKVTA KGAAEVGNVIADIGGSHNAQQAGAAFTEVTRQLAMLSPQDPLFQHYVNASNNPEALKKLAEQLAPDVNGGATQAATTSQTLISNVTGNRTGGGRGLSSGD TLKETGVWVQTLYSDANQDMRDGVAGFNAYSRGIAVGADGKLNDQLTLGLAYSYLNTDVNGKAGSKTEVDSHAFTLYGGFEQGNYFVDAALTYGMNDNDS QRNIGNTKAKADYDSNLFGVNLVGGYTYHITPDLLIEPRIAARYSLVDIDGYREKGSSAALKVKDQRYEVAELGAGFRVAASYPLGQGTLTPQAKLMAFH DFAADEASSTSTFTLGNTPFVTSGAGAVRNSYEAGIGADYRLGAVTLGLNYDYVGKSGFDADTFSAKVRYDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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