Pseudomonas fluorescens C3, VC34_RS09405 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C3 FCC4LTTACXX-wHAIPI007897-94_L5_1_(paired)_contig_8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTTTGCCGCCGAATGCTCGGCACCCGCCGCCTGACTACTTGCCTGACCCATCCACCACTCCTACTACCCAGACCGGACTTCTTTGGAAGAAGCACTATG CTTTGCCGTGCAGCATGCGCTGTTTTACTTACTGTTACAGACGTTTTGTTGACTGTAAAAAATCGGTAAAGCGTAAAGGCGCGAAGCATAGCGCAGCACT CGTCGTATTTCCCTGCATAAAGCTGGTCAAGTGCGCCTCTCATCGCTAGAATTGCGCACTTTTTGATCAGAGGCGCAGAAAACGTCCTGTCTCGCGAATC ACTGCTGCTTTTTGACGGCGCCTGTTGTCGCCATGCTGCGTTGCCGCTTCTCGCCATAGCAAGCTATGACTCGGCGCGGCGCCTTGCCTGGCAACAACAG TCACTCGTCAAAAAACAGCGTATTCACGAGATAGGACGTAAGCGCCCGTTTGTCGCCTTGCCGACTTCGGCTGGAGGCGTCACAAATACCGAGGTTAGAC
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| DNA Sequence for Gene |
>VC34_RS09405
|rimO
ATGTCCACCACTCCTGCGCCGGCCAATCCAAAGGTTGGCTTCGTATCCCTGGGTTGCCCCAAAGCACTGGTCGACTCCGAGCGCATCCTTACCCAACTGC GCATGGAAGGCTATGACGTTGTGTCCACTTATCAGGACGCTGACGTCGTGGTGGTCAACACCTGCGGCTTCATCGACTCGGCCAAGGCTGAGTCTCTGGA AGTGATCGGCGAAGCCATCAAGGAAAACGGCAAGGTCATCGTGACCGGCTGCATGGGCGTCGAAGAAGGCAACATTCGTAAAGTGCACCCAAGCGTGCTG GCCGTGACCGGTCCGCAGCAATACGAGCAAGTGGTCAACGCCGTGCACGACGCCGTGCCACCGCGCCAGGATCACAACCCGCTGATCGACCTGGTGCCGC CGCAAGGCATCAAGCTGACCCCGCGCCACTACGCTTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGTTTCTGCATCATCCCGTCGATGCGCGG CAAACTGGTCAGTCGTCCGGTCGGTGACGTGCTCGACGAAGCTCAGCGCCTGGTCAAGGCCGGCGTCAAAGAGCTGTTGGTGATCTCTCAAGACACCAGC GCCTACGGCGTCGACGTGAAATACCGCACCGGTTTCTGGAACGGCGCGCCGGTGAAAACCCGCATGACCGAACTCTGTGAAGCCCTGAGCACCCTCGGCG TCTGGGTTCGTCTGCACTATGTTTACCCGTATCCGCACGTCGACGAGCTGATTCCGCTGATGGCCGCCGGGAAAATCCTGCCATACCTGGACATCCCGTT CCAGCACGCCAGCCCGAAAATCCTGAAAGCGATGAAACGCCCGGCCTTCGAAGACAAGACCCTGGCCCGCATCAAGAACTGGCGCGAAATCTGCCCGGAC CTGATCATCCGCTCGACCTTCATCGTCGGCTTCCCTGGCGAAACCGAAGAAGACTTCCAGTACCTGTTGAACTGGCTGACCGAAGCGCAACTCGACCGCG TCGGCTGCTTCCAGTATTCGCCGGTCGAAGGCGCACCGGCCAACCTGCTGGACGCGGCCATCGTGCCGGACGACGTCAAGCAAGACCGCTGGGATCGCTT CATGGCGCACCAGCAAGCCATCAGCTCGGCACGCCTGCAAATGCGCGTTGGCCGTGAAATAGAAGTGCTGGTCGACGAAGTCGACGAGCAAGGCGCGGTT GGTCGCTGCTTCTTCGATGCCCCGGAAATCGACGGCAACGTGTTCATCGACAACGGCAGCAACCTGAAACCAGGCGATAAAGTCTGGTGCAAAGTGACCG ACGCCGACGAATACGACCTGTGGGCTGAACAGATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGCAAAAAATACGAAAAGCCCTGCTCTCTTGACGAGATGCGGGGCTTTTTTACGTCTATCGTTTTGTGGGAGAAAGGATTCGCATCATCAACTGCAAAA AGGGGCAGCCGGCCATGCGCCAACATTCGGTCATCCACACGCCGAAACAGAGCGACTACGAAGAACTCACTCAAGTCTGGGAAGCCTCGGTGCGCGCCAC TCATGACTTTCTGCCGGACAGCTACATCGAACTGCTGAAGAACCTGGTGCTGACGCGCTACCTCGATGCGGTGATGCTGATCTGCACCAAAGACCCGCGC CAGCGCATCACCGGGTTCGCCGGAGTTGCGGCGGGCAAGATCGAAATGCTCTTCATCGACCCGGCTCACCGCGGCCAGGGCCTGGGCAAGCAGTTGCTGC GCTATGCGATGGAACACCTGAATGCCGATGAACTGGACGTCAACGAACAGAACCCGCAAGCCTTGGGTTTTTACTTCAAACAGGGCTTCGAAGTGATCGG
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTTPAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRKVHPSVL AVTGPQQYEQVVNAVHDAVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKAGVKELLVISQDTS AYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKILKAMKRPAFEDKTLARIKNWREICPD LIIRSTFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISSARLQMRVGREIEVLVDEVDEQGAV GRCFFDAPEIDGNVFIDNGSNLKPGDKVWCKVTDADEYDLWAEQI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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