Pseudomonas fluorescens C3, VC34_RS06710
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C3 FCC4LTTACXX-wHAIPI007897-94_L5_1_(paired)_contig_5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTAAAGCGGCGTTGGTGCTGGGGCTGTGCTTTATCTCCGAAGGCGCGATTCCGTTTGCCGCCAAGGACCCGTTGCGGGTGATCCCGGCGAGCATTGCC GGTGGTGCGCTGACCGGTGCGTTGTCGATGTATTTCGGCTGCAAGCTGATGGCGCCGCACGGCGGATTGTTCGTGCTGGCGATTCCGAATGCGATCAACC ATGCGCTGTTGTATCTGCTGGCGATTGTGGCCGGGAGTTTGTTGACGGCGGTGGTTTATGCGGTGGTCAAGCGACCGGAAGTCGTTGAACTGGCGATAGA GCCAGTCAGCGCCTGACACCCAACCCTGTGGGAGCGAGCTTGCTCGCGATGACGGACTTACATTCAGCAATTATGTTGGCTGTTAGACCGCTTTCGCGAG CAAGCCCGCTCCCACAAGGGATCTGCGGCGGTGGCAGGATTGTGTGTCATGCCCGGGTCACATGTGCATGTTTTAGTTTTCCTTTTTCAGGGAGAGCACC
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| DNA Sequence for Gene |
>VC34_RS06710
ATGAGCGAATTCGACATCAGCCGCCGTCGTGTCATACAAGCTGTCGGTGCCGGGCTGTTGTTGCCAGGCCTGGCGCCGGCGGTGATTGCCTCGGTCAAGG ATCGTCCGCAACTCACCGATGGCGTGCAGTCCGGCGACGTGCTGGGCGACCGGGCGATGATCTGGAGTCGTTGTGATCGTCCGGCGCGAATGGTGGTGGA GTGGGACACCCGCAGCCTCTTCAGCAACCCTCGTCGTTTTGTCTCGCCATTGGCCGATTCCAATACCGATTTCACGGCCCGCGTCGAACTCACTGGCCTG CCCGCCGACCAGGCGATTTTCTACCGCGTGCACTTCGAAGACGCCCAGAGCGGCGTCGCCAGCGAACCCTGGTTCGGCCATCTGCGCAGCGTGCCGCAAA CCCGTCGCGACATCCGTTTCGTCTGGAGCGGCGACACCGCCGGTCAGGGCTTCGGGATCAACCCGGAGATCGGCGGCATGCGCATCTACGAAGCCATGCG TTTGCGCCTGCCAGACTTCTTTATCCACAGCGGCGACACCATCTACGCCGACGGCCCCATACCTGCGCAGCTCACCACAGAGAGCGGCCGCGTGTGGCGC AACATCACCACTGAAGCCAAGAGCAAAGTCGCCGAAACCCTCGACGACTATCGCGGCAACTACCGCTACAACTTGATGGACGAAAACATTCGCCGCTTCA ACGCCGAGGTCCCGCAGATCTGGCAGTGGGACGATCATGAAGTGGTGAACAACTGGTCGCCGGGCAAGCAGTTGGATAATCGCTACGAGAGCAAAGATAT CCACAGCCTGGTCGGACGCGCGCGTCAGGCCTGGCTCGAATACGCACCGATGCGGTTGCAGAGCGCCGATGGTGGCGGGCGGATTTATCGCAAGCTCGGT TATGGGCCATTGCTTGATGTGTTCGTGCTCGATATGCGCAGCTACCGCGGGGCGAATGATGCCAACCTCGGTGACATAAAACCGTTCCTCGGCCGTGAAC AACTGGACTGGCTCAAACGTGAGTTGAAGGCTTCCAATGCCCAGTGGAAAGTCATCGCTGCTGATATGCCGATTGGCCTCGGCGTACCGGACGGTGAAGT CAGCCCCGGTGTGGCGCGTTGGGAAGCCGTGGCCAACGGTGATCCGGGACCGGCCCAGGGGCGTGAACTGGAAATCGCCGAATTGTTGGGTTTTCTGCGG GCGCAGCAGGTGCGCAATTTTGTCTGGCTGACGGCGGATGTGCATTATTGCGCCGCGCACCATTACCACCCGGACCGTGCGGCGTTTCAGGATTTCGAAC CGTTCTGGGAGTTTGTCGCCGGGCCTTTGAATGCGGGGAGTTTCGGGCCTGATTCGCTGGATAAGACCTTTGGCCCGGAAGTGGTGTTCGAGAAAGCACC GCCGGCACAGAACACCTCGCCGTTTGCCGGGTTTCAGTTTTTTGGTGAGGTGAATATTGATGGGCAGACGGGGGAGATGAGTGTGGTGTTGCGGGATTTG GATGGGGTCAGTGTGTTTCAACAAAATTTGCAGCCGGTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCGACCCCTCACCCCAGCCCTCTCCCCAGAGGGGAGAGGGGGCCGACCGAGGTGTCTTGCGCTATTCATCGACCTGAACGTCCGAGTCGATTATGGAT TCAACGCAGCACTTTCAGGTCGCAGAATTTCTAAAGAAACCCTCGGTCAGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGTGAATTTGAGAT CAGAATCACGACGTTCGATTTGCCGCAAGTCTCAGGATCTGCTCAAGCACTTCACTCATCCGCTCAATTACCTCCAGATTGCTAAACCGCACAACCTCAA TACCTTGCTGCTGAAGATAAAGCGTTCGACGCCGGTCATGTTCTTTTGCCGCTGTCTCGTAATGCTGACCACCATCCAGTTCGATGGCCAACTTCAGTTC CACGCAATAAAAATCCAGGATGTACGGCGGGCATGGAAACTGCCGACGGAATTTCAGATTGGCGATTTGCCGAGAACGAAGTTTTTGCCAGAGCAGCAGT
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| Amino Acid Sequence |
>alkaline phosphatase
MSEFDISRRRVIQAVGAGLLLPGLAPAVIASVKDRPQLTDGVQSGDVLGDRAMIWSRCDRPARMVVEWDTRSLFSNPRRFVSPLADSNTDFTARVELTGL PADQAIFYRVHFEDAQSGVASEPWFGHLRSVPQTRRDIRFVWSGDTAGQGFGINPEIGGMRIYEAMRLRLPDFFIHSGDTIYADGPIPAQLTTESGRVWR NITTEAKSKVAETLDDYRGNYRYNLMDENIRRFNAEVPQIWQWDDHEVVNNWSPGKQLDNRYESKDIHSLVGRARQAWLEYAPMRLQSADGGGRIYRKLG YGPLLDVFVLDMRSYRGANDANLGDIKPFLGREQLDWLKRELKASNAQWKVIAADMPIGLGVPDGEVSPGVARWEAVANGDPGPAQGRELEIAELLGFLR AQQVRNFVWLTADVHYCAAHHYHPDRAAFQDFEPFWEFVAGPLNAGSFGPDSLDKTFGPEVVFEKAPPAQNTSPFAGFQFFGEVNIDGQTGEMSVVLRDL DGVSVFQQNLQPV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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