Pseudomonas fluorescens C3, VC34_RS29140 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C3 FCC4LTTACXX-wHAIPI007897-94_L5_1_(paired)_contig_44, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCAGGCCCATCCACTGCTTGCCGGGCGAACGCCCCTGATTGAGCACTTCGAACAGCACCATGTACCACCAGCTCACCACGAACAACAGAATCGAGCCGA GCCCTGCACCGAGTTTTCCGAGGAACGCCAGGACAATAAACAGCAGGCCAACGATCAATCCGCGCAGCCCGAGATCGATGGAGAACGCCAGCGCACGAAC CATCAACCCGGCCGGGCGCAGTGGCAAGTCGATGCCTTCCGGCGTTTCGACTTGATACCGCGTATCCAGTGGCGGGGACAGCGTCGCTTTCCTTGGCAGT GCTGTGGTCTCGAGCATGGGCAACCTTGATGTGGCCTGTTCGGGATTCGATGTCCGTCCGATGCTAGCAGCCTCTCGGGGGAAAACGACATAACTATGTA TTGCACGGTAATTGGCCAGAGGTGATTGAATGACGAGATTACTGGCCGGGGCGGGATGTGAACGCCTAGACTTCGCCGATCTTCAGTTCAGGAATAGCCC
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| DNA Sequence for Gene |
>VC34_RS29140
|sbcB
GTGACCTCTATCTTCTGGTACGACTATGAAACCACTGGCATCAACCCCCGCTGCGACCGCCCGCTGCAAATGGCGGGGATTCGCACTGACTTCGATCTCA ATGAAATAGACGAGCCGGTCAACCTTTACTGCCAGCCCAGTGAAGACATCCTGCCCCATCCGGCAGCCTGCGTGATCACGGGTATTACGCCCGGTCGACT GGCCGAGCAAGGCTTGAGCGAAGCCGATTTCATGACCCGGGTGCATGCCCAACTCGCTGCGCCCGGCACGTGTGGGGCGGGGTACAACACGTTGCGTTTC GATGACGAGATGACCCGTTACAGTCTTTACCGAAACTTTTTCGACCCTTACGCGCGCGAGTGGCAGGGCGGTAACAGCCGCTGGGACCTGATCGATGTGG TGCGTGCAGCGTATGCCTTGCGCCCTGACGGCATCGTTTGGCCGACAGACGACGAGGGGCGGATAACGCTCAAACTCGAACGCCTGACCGCCGCCAATGG CATTGATCACGGAAACGCTCACGAAGCGCTATCGGACGTTCGCGCCACCATCGCCCTGGCGCGTCTGATCCGGGAAAAGCAGCCGAAGTTGTATGACTGG TTGTTTCAGTTACGCGGTAAACAAAAGGTGATGGATCAGATTCGGCTGTTGCAGCCGATGGTGCACATCTCCGGACGCTTTTCAGCGGCGCGCAATTATG TCGGTGTGGTGCTGCCCCTGGCCTGGCACCCGCGCAACAAGAACGCCTTGATTGTCTGTGACCTGCATCTGGACCCTCAGGGCTTGCTCGATCTTGATGC CGACACCTTGCGTCAACGGCTGTATACCCGCCGCGATGACTTGGCCGAGGGCGAGTTGCCGGTGCCGCTCAAACTTATCCACATCAACAAATGCCCGGTG GTGGCGCCGTTGTCGGTACTTCGCACTGAAGATCAGCAACGTTTGGGGCTGGATATGTCGCTCTACCAAGAGCGCGCGCTGCGGCTAAGTGACGCACAAA CAGTTTGGCGAGATAAAGTTCAGGCGATTTACGCCAGCGAAGATTTCACCTCGAGCCAAGACCCTGAGCAACAGTTATACGATGGTTTTATCGGTGATCG GGATCGGCGTCTTTGTGAGCAAGTCAGGTCTGCCGACCCGGCTCAATTAGCGCAACAACAATGGCCTTTCGATGATGAACGATTGCCTGAATTATTGTTT CGATATCGCGCACGCAACTTCCCCGATACGTTGAGTTTCGAAGAGCAAGAACGCTGGCGAATATTCTGTCAGCAACGTTTGTCAGCCCCCGAGTGGGGGG CGCCAAATACGCTGGAAACTTTTGTAGAAGCCGCCGCCCAATGGAGTATTACGGCTACATCGTTTCAGCGAGAGGTGCTGAATGAATGGCAGAATTATGT CCAGGCATTACGCAAACGTTTGAATCTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCGAAAATGTTCGGGTGCTGAATCCCGGGCATAAAAAAACGCCAGCAGATGCTGGCGTTCTTTTTTGTCGCGGATGAGTCTGCGACAAGCGCTACGGC TTAGCCCAGCAGGGTAGCCCAGCCTTCAACCACGTCACCGCCCCACTTGGCTTTCCACTCTTTCAGAGTTTTGTGGTTGCCACCTTTGGTTTCGATGACT TCGCCGTTGTGCGGGTTTTTGTATTGTTTAACTTTGCGAGCACGCTTGGTGCCAGTAGTTTTTACTGCGCCGCCGCGTGGTGCTTTGGTTTTGGACTCTG GATCCAATAGCGCAATGATGTCACGCAGAGACTTGGAGTACTCGCCCATCAGGGTGCGCAGTTTGCCTTCGAATTCCAGCTCGGTTTGCAGTTTGTCGTC TTGGGACAGGTTCTTCAAACGGGCTTGCAGCTCTTTGATAGCTTCTTCGGTGGCGCGATATTCGTTGATCAAGGACATGAGGACTACCTTATGTTGGGGC
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| Amino Acid Sequence |
>exonuclease I
MTSIFWYDYETTGINPRCDRPLQMAGIRTDFDLNEIDEPVNLYCQPSEDILPHPAACVITGITPGRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRF DDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRAAYALRPDGIVWPTDDEGRITLKLERLTAANGIDHGNAHEALSDVRATIALARLIREKQPKLYDW LFQLRGKQKVMDQIRLLQPMVHISGRFSAARNYVGVVLPLAWHPRNKNALIVCDLHLDPQGLLDLDADTLRQRLYTRRDDLAEGELPVPLKLIHINKCPV VAPLSVLRTEDQQRLGLDMSLYQERALRLSDAQTVWRDKVQAIYASEDFTSSQDPEQQLYDGFIGDRDRRLCEQVRSADPAQLAQQQWPFDDERLPELLF RYRARNFPDTLSFEEQERWRIFCQQRLSAPEWGAPNTLETFVEAAAQWSITATSFQREVLNEWQNYVQALRKRLNL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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