Pseudomonas fluorescens C3, VC34_RS28370 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain C3 FCC4LTTACXX-wHAIPI007897-94_L5_1_(paired)_contig_41, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTGGCCGTCGACATCAACCCTTTGGCGTTACGCATGACGGCGGTCAACGTCGCGCTCGCCGAGGTGGCTAACGTCAGCATCGAGGCCAGCGATGTACTGC AAGACGTCGACGGCCACTTCGACTTGATCGTCGCCAATCCGCCCTACATGGCCGACCCGGCCGAGCGTGCTTACCGGCATGGCGGCGGGGCGCTGGGCGC GCAGTTGTCGTTGCGCATTGTCGAGCAAGCCCTGTATCGGTTGGCCCCCGGTGGCTCCCTGGTGTTGTACACCGGCGTGGCGATGATCGATGGTCTCGAC CCGTTTCTGGATGCTGTGACTCCGTATCTGGAATCGCCGATGTTCGGCTGGACTTACCACGAACTCGACCCCGATGTGTTCGGTGAAGAACTGTTGACCG CCGGCTATCAGCGGGTGGAACGAATAGCCGTCGTCGCCCTGATTGTCACGCGTATCGGCCCCGGCATCGGGGGCACCGTCACCTCGTCAGCAGGTATGCC
DNA Sequence for Gene
>VC34_RS28370 |ligD
ATGACCAGGAGCCTGGACGATTACAATCGCATGCGCGATTTCTCGGCGACCGCTGAACCGGCCGCCGGTAAACGTTCGGGCAAAAAAACCGCGAAAGACC ATGCCTTGCAGTTCTGCATCCAGAAGCACGATGCCTCGCGCCTGCATTACGACTTCCGCCTGGAGCTCGATGGCGCGCTGAAAAGCTGGGCGGTGCCCAA AGGCCCGTCACTGGACCCCAAGGTCAAGCGCCTGGCGGTGCACGTCGAGGACCATCCGATGGATTACGCCACCTTCGAGGGCCGCATTCCCGAAGGGCAT TACGGCGCCGGCGAGGTGATTGTCTGGGACCGTGGGGTATGGATTCCTCAGGACGATCCGGCCGAGGCTTACGCCAAGGGCAAGCTCAAATTCGAGCTAA AGGGCGAGAAGCTCGGCGGCCTGTGGAACCTGGTGCGCACGCACCTGCCGGGCAAGCAGGAGCAATGGTTTCTGATCAAGCATCAGGACGGCGCGGCCAA ACCCGAAAGCGATTACGACGTGGTCGCCGCCGAGCCCGACAGCGTGCTCAGTGACCGGACCATCGTGGCCAAAAAGCCGAAGACCGCTGCCAAACCCAAA CCCGTCAAAAAACCCACCATCCCGGCGCGCAAGGAAAAGTCGGCGCCATTGACGGGCGCCCGCAAAGCCAAATTGCCTGACCTGCTCAAACCGGAACTGG CGACGCTGGTCGAAAAGGCCCCGGGCGGCGAGTGGAGCTATGAGATCAAGTTCGACGGCTATCGGATCATGGCGCGCATCGACCACGACGAAGTCAAACT GTTCACTCGCAACGGTCACGACTGGACCCACAAACTGCCCAGACAATCCGAGGCGTTGGCAGCGCTAGGCCTCGAATCCGCCTGGCTCGACGGGGAAATG GTGGTCGCCGACGAGCAGGGCGTGCCGGACTTCCAGGCCTTGCAAAATGCCTTCGACTCGGGCCGCAGCGGCAACATCGTCTACTACCTGTTCGACATGC CTTACCTCAATGGCGTGGACCTGCGCGAGGTGCCGGTCGAGGAGCGAAGGGTGGCGCTGTCGACCGTGCTCAACCCGAACAAAGACCCGCTGCTGCGCTT CTCCGATGCTTTTAGCGAAGAGCCGGAAGCCTTGCTCAACAGCGCCTGCCAAATGCAGATGGAAGGGTTGATCGGCAAGCGTCTGGGCTCGGCTTACGTG TCGCGACGCAGCAGCGACTGGATCAAGCTCAAGTGCAAGCATCGACAGGAATTTGTGGTTGTCGGCTTCACTGACCCTAAAGGCTCGCGCAACGCCTTCG GTGCGCTGCTGCTGGGATTACATGACCGCGACAGCGGTGAGTTGCGTTACGCGGGCAAGGTCGGCACCGGGTTCAATGAGACGACGCTCAAGCGCATCTA CGAGCAACTGAAACCGCTGCAGACCAAAAAGAGTTCAGTGGTCAACCCGCCGAGCGGGTTTGACGCCAAGGGAGTGCACTGGCTCAAGCCTACGTTGCTG GCTGAGGTCGCTTATGCCGAAATGACCAAAGAAGGTTCAGTCCGTCATGCGGTGTTCCATGGCCTGCGTGATGACAAACCTGCCGAAGACATTACCGAGG AGCGTCCGAAAGCCGTGAAGACTTCAGCCGCGAAAAAAACCACTGCCGAAAAACCTACCACCCCTGCCAAAAAGAAAGCCGCGCCCGCGCCCTCACAAAT CGGCCTGGGCGAGGGCAAGGTCCGTATCACTCACCCGGACCGGGTGATCGACGCCAGCAGCGGCACCACCAAAGTGCAACTGGCGGAGTATTACGCCAGC GTCGCCGAATGGATTTTGCCCGAGCTCAAGGACCGGCCCGTGGCACTCGTGCGCGCCCCGGACGGCATCGCCGGCGAACTGTTTTTCCAGAAGAACGCCG AGCACCTGGCCATTCCGGGGATCACCACCCTGGACAAGGCACTCACCGGTCAACCGGTGATGATCATCAACAACGCCGAAGCCCTGATCGGCGCCGTGCA GATGAGCACCGTCGAGTTGCACACCTGGAACGCCACCTCGGACAACCTCGGCAAACCCGACCGCTTCGTCCTCGACCTCGACCCGGACCCGGCGCTGCCC TGGAAAAGCATGATCGAAGCCACCCAACTGACCCTCTCGGTACTCGATGAACTGGGGCTCAAGGCGTTCCTGAAGACCAGCGGCGGCAAGGGTATTCACC TGGTGGTGCCACTGACCCGCAAGCTGGGCTGGGATGAGGTGAAGGACTTCAGCCACGCGATTGTCAGCCACATGGCCAAGTTGCTGCCGGAGCGTTTTTC CGCCGTGTCGGGCCCGAAGAACCGAGTAGGGCGGATCTTCATTGATTACCTGCGCAACGGCCTCGGTGCCACCACCATCTGCGCCTACGCCGTGCGCACC CGCGAAGGGCTGCCGGTGTCGGTTCCGATCTTTCGGGAAGAGGTGGCCGAGCTCAAGGGTGGCAATCAGTGGAACGTGCACACTGTGCATGAACGCCTGG CCGAGGTCGGCGACGAGCCTTGGAAGGATTTGAAGAAAACCCGCCAGTCGATCACTGCCGAGATGCGGCGGCGGGTCGGGATGAAAAAATAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGGTGGTGTAGGAGCTGGCGAAGGCTCGGGCCGCGTTCGGACGATCTTGGCGGCGGTTGTTACACCGACAAAATCAAGATCAAAAGATCGCAGCCTGCGG CAGCTCCTACGGGGGGTTACTTGATAAACGCCTGTAGGTCACTGGTCAGCTTGTCGATCGCCACTTTGAAATCCTTGGTGGTGATCTTCTGGCTCTCGTT CGACAGTTGGGTGCCAAATACCTTGCGCACCACTTTGGCCACAGTTTGATTGGTTTTAGCGTCGATGAACTCGGCCTCGATGAAGAGGTTGGTGTCCTGG TCCCGGTGACCGGTGGCGGCCTGTGTAGCTCCGACTACAGCCGCAACCGGCACCACTTCATACCACTTCATGCCTTCGTTGGAGGCACTCACCCCGGTGA TCGCCGCGCGCATGATCAAGGTTTTTGAACCGGCAGGCGCTGATTTCGCGCTCGGCACCACCCGATATTTCTGGCCCAGCACGCCTTTGGCCTTGCTGGT
Amino Acid Sequence
>ATP-dependent DNA ligase
MTRSLDDYNRMRDFSATAEPAAGKRSGKKTAKDHALQFCIQKHDASRLHYDFRLELDGALKSWAVPKGPSLDPKVKRLAVHVEDHPMDYATFEGRIPEGH YGAGEVIVWDRGVWIPQDDPAEAYAKGKLKFELKGEKLGGLWNLVRTHLPGKQEQWFLIKHQDGAAKPESDYDVVAAEPDSVLSDRTIVAKKPKTAAKPK PVKKPTIPARKEKSAPLTGARKAKLPDLLKPELATLVEKAPGGEWSYEIKFDGYRIMARIDHDEVKLFTRNGHDWTHKLPRQSEALAALGLESAWLDGEM VVADEQGVPDFQALQNAFDSGRSGNIVYYLFDMPYLNGVDLREVPVEERRVALSTVLNPNKDPLLRFSDAFSEEPEALLNSACQMQMEGLIGKRLGSAYV SRRSSDWIKLKCKHRQEFVVVGFTDPKGSRNAFGALLLGLHDRDSGELRYAGKVGTGFNETTLKRIYEQLKPLQTKKSSVVNPPSGFDAKGVHWLKPTLL AEVAYAEMTKEGSVRHAVFHGLRDDKPAEDITEERPKAVKTSAAKKTTAEKPTTPAKKKAAPAPSQIGLGEGKVRITHPDRVIDASSGTTKVQLAEYYAS VAEWILPELKDRPVALVRAPDGIAGELFFQKNAEHLAIPGITTLDKALTGQPVMIINNAEALIGAVQMSTVELHTWNATSDNLGKPDRFVLDLDPDPALP WKSMIEATQLTLSVLDELGLKAFLKTSGGKGIHLVVPLTRKLGWDEVKDFSHAIVSHMAKLLPERFSAVSGPKNRVGRIFIDYLRNGLGATTICAYAVRT REGLPVSVPIFREEVAELKGGNQWNVHTVHERLAEVGDEPWKDLKKTRQSITAEMRRRVGMKK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site