Pseudomonas fluorescens C3, VC34_RS22065
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C3 FCC4LTTACXX-wHAIPI007897-94_L5_1_(paired)_contig_28, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAGGTCGAACTGCCCGGTGCCGTCCTTGTCAGCTTCATTGCCGGCGGTGCCGAAGTCCAGTGGGACGGTGACGTGGCTGTCGAAGGAGAGGATTCGCTC GTGCAGCTCATCGGCCTGTTTCATCACCGTGACCGGGTAACCGGGATTGTCCTTGAACCAGTAATCCCAGGCCGCAAAACCTGCACCGGCACTGATCGCC AGGGCCAGCGGCAGGCCGATGTAAAGAGCCTTTTTCGAACGTGGTTTTGTCATGTTCATCTCAGTCAGGTTCGTTGCCCCGGTGTGGAGGGCTTTGCTAT CTGGGATGGACGAGTGATCCCGTTGGAAATTTAGGGTGGAGCTGATGGCCTCTTCGCGAGCAAGCCCGCTCCCACATTGGACCGAGGTGTACATAGATCA AATGTGGGAGCGGGCTTGCTCGCGAAGCTTTTAAATTTTTGGAGGCAACAAACGTTCTAGCTTGGATAAAGCCTGCTTCATGGCTGACACAGGTAGGGCA
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| DNA Sequence for Gene |
>VC34_RS22065
ATGACGATTTCTCGACGATGGTTCATGGCAGGCCTGGCGCTGACCGGCGCCGCCGTGCCTGCGGCTTTTTATGGGCATCGTGAATGGACGAAACCGGATC CGACGATCACCCCCGGCGAAGCGTCATTCGATGTCGCGGATGTCGCTGGCCAACACTTGGCGAACACCTTGCGGGGTGTCTGGCAGATCCGTTTCGAAGG GCGTGATGCCGGCATCGAAGGCCTGCCACGGGACGGGCTGGAGGTGTTTCTCGACATCGGTCACAAAGGTCGCGGCTTGAACGGGTTCCTCGACACCGCC GAACGTTTGCGTTCGAGCGAAGCGCCGCGTTATCGGGTGCTCGGCGATCTGGCCGGCGCCAAACCGGCGCAATTGAGCTGGCGACTGCTCAGCGTCAACG GCACAGCGGATTACGAATTCAGCCTGTTGCTGGACGAAGTCTGGGCCGGTTTCGGCAATGCTGGCAGCGGCACCGTCAGTGGTCGGGTGTTGAATCTGGA CCGACCGTTGATGTTGACGGCCCAGGACAATCGCTTCATTGCCGTCAAACGGGTGTTCCCCGAAGCCCGTGAGCGCACCGGTCTCAATCCGCCACTGCTG GCCTGGCTGGTGTCCCCGGAGCATCGGCTGTTTCACCAGCTCTGGCATGCCTCCCGGGACAAATGGCACACCCTGTCCGAAGACAAACGCGGCGCCCTGC GCGGTATTGGCTGGCAGCCTGGCCCGCGGGACAAGGAGCGTGATGCCCGTGGCGCGCGCAAGGATCGTAACGGCTCGGGTGTGGATTTCTTCTTCATGCA CCGGCACATGCTCGGCAAGGCGCGCTCCCTGCAAGACTTGCCGTCCTGGCAGCACTTCCCGCTGCCACAGCCGGAACTGGCGCGTGATCGGGTAGGGTTC GCCCGTTATTTCGACAACCACGACGGCACCGCGCTGCCGCCGACCTGGCTGGCCGACGACGATGCCGAGTACTCGCAATGGGTCAGCGACATCAAGACCG CCGAGACCTACCACAGCAATTTTCAGGTCTGGGAATCGCAATACCGCGATCCGCGTTACTTATCGAAATTGACCCTGGGTCAGTTCGGCTCAGAGGTCGA ATTGGGGCTGCACGACTGGCTGCACATGCGTTGGGCCTCGGTGCCGCGTGATCCGTCCAACGGTCAGCCGGTGCCGTTTGCCCGGGATCCGGCGGACTTT TCCGCACGCTGGTATGCGCCGGAAAACGACTTCCTCGGCGATCCGTTTTCGTCCCACGTGAACCCGGTGTTCTGGCATTTCCATGGCTGGATCGATGATC GTCTGGAAGACTGGTTCCGCGCGCACGAGCGCTTTCATCCGGGGGCGGTCAGTCGGCTTGAGGTCAATGGCGTGCCTTGGTTTGCGCCCGGCCGTTGGGT CGAGATCGACGACCCGTGGCTCGGTCCGAGCACCCATGGTTGCAGTACTACGCCGGGGTTGCAGAGCGGCAAGTCAGTGGAGATGGACCCGGAAACTATG AAGCTGGCGTTGCGGATTACCTTTGGTGAAGACGAGAAGAAACTGGAGGATCTGTTCCGCAAAGTGCCGCAGCGGCCTTGGTATGCACGGCATTTGAAGG TTAAGCCGACTACCAGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGCAGGTGATACCGCGTTATCGTTCTTCGCGAGCAAGCCCGCTCCCACATTTGATCTGTGTGCACCTCGGTCCAATGTGGGAGCGGGCTTGCTCGCGA AGGCGGCCTGACAGACGCCGCATTACAACACCTGCCACCCTCCACCCAGCGCCTTGTACAACGCAATACTCGCCTGCAACCTCGACAACCGCAGTTGCAC ATTCAAATCCTGCGCCGCATACAGCGTGCGCTGTGTCTCCAGCACCGTCAGCAAATCCTCGGCACCGGCCTGATAACGGCTTTGTGCAATGTTGAACGCG GTCTGCGCCTGGCTCAGTTCTTCACCTTGCCACTGCCGCTGTTCGTCCAGTCCGCGAATGCTGTTCAGAGCTTTTTCCACATCGGCAAAACCATTGATGA TCGCCCCGCGATACGTCTCCAGCAGTTCCTCCTGACGGGCCGTGGCCTTGTCGCGCTGGGCACTCAGCCGACCATTGTTGAAGACCGGTGCGAGCAGTCC
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| Amino Acid Sequence |
>PvdJ/PvdD/PvdP-like protein
MTISRRWFMAGLALTGAAVPAAFYGHREWTKPDPTITPGEASFDVADVAGQHLANTLRGVWQIRFEGRDAGIEGLPRDGLEVFLDIGHKGRGLNGFLDTA ERLRSSEAPRYRVLGDLAGAKPAQLSWRLLSVNGTADYEFSLLLDEVWAGFGNAGSGTVSGRVLNLDRPLMLTAQDNRFIAVKRVFPEARERTGLNPPLL AWLVSPEHRLFHQLWHASRDKWHTLSEDKRGALRGIGWQPGPRDKERDARGARKDRNGSGVDFFFMHRHMLGKARSLQDLPSWQHFPLPQPELARDRVGF ARYFDNHDGTALPPTWLADDDAEYSQWVSDIKTAETYHSNFQVWESQYRDPRYLSKLTLGQFGSEVELGLHDWLHMRWASVPRDPSNGQPVPFARDPADF SARWYAPENDFLGDPFSSHVNPVFWHFHGWIDDRLEDWFRAHERFHPGAVSRLEVNGVPWFAPGRWVEIDDPWLGPSTHGCSTTPGLQSGKSVEMDPETM KLALRITFGEDEKKLEDLFRKVPQRPWYARHLKVKPTTS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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