Pseudomonas fluorescens C3, VC34_RS21015
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C3 FCC4LTTACXX-wHAIPI007897-94_L5_1_(paired)_contig_25, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAATCCGCTCTTTTTCCCCTCTCCAATCCGCCTTATCTTTGCCGCACCAAACAGCACTTGCCAAGCAAGAAGGTTTAAAGATGTCCAACACTATGGGTAT TGCCAGCGCTTTCGTTTTGTCCTCTTTGTTTCTGTCTCCGTTCGCCATCGCTGAAGAGTCGCAGACGTTCGTCGCGCAAAATTCCGCACGCGCTGCGGCA TTCGAACAGTATCAAAGCGAAATGACGGCCAAGGCTCAGGAAGCTGCGCAAACCCCTCAAGCGTCGACCACTCAAGCCCAGCCACGGGTTGAGAAAGACA GCTGATCGTTAACTATCGCTCTGTTTCCCTCGACACTTTTCATCGGCTCTTCCCTTTGAAAAGTTGTCTTCAAAGCCGCTGCTATCAGCGGCTTTTTTTC GTTGTGGTTTTAAACAGCTTCAGTTCGTCTTCCCTAACAAGAAACATCCGGAGTCTCAAAACAATGAGGCTCTTAGTTGACCCAAGGAGCTTTACCGCTA
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| DNA Sequence for Gene |
>VC34_RS21015
GTGCGTTTCCCTCTTAGATTCAGCCCGTTATTCATTGCAATCGCTGCAACGGTGGCGCCTGCTGCTCACGCCGCAGACGACTCAAACGCCGAAGGTTTTG TTGAAGGCTCGAGCCTCAACCTCAACGCCCGTAACTACTACATGAACCGCAACCGCCTGCAGCAGACGGACGACAACATTGAATGGGGCCAGGGTTTCCT AGGCCTCTTCGAATCGGGTTACACCCAAGGCACCGTCGGTTTCGGTGTTGATGCCCACGCCATGCTCGGGCTCAAGCTCGACGGCGGTGGCGGCACTGAT AATTCGAGCATCCTGCCGGTCAGCGATGGCAACGGCAAAGCGCCAGGTTCGTTCTCGACGGCGGGCGGCACGCTGAAAATGCGTGCCTTCGATACCGAAC TGAAGGCCGGGGACTTGTTCCTCACCAACCCGATGATCGCCGGCGGCGAAACCCGCATGCTGCCGCAGACCTTTCGCGGCGTCAGCCTGACCAACCACAG TTTTGACAGCTGGATGATTGAAGGTGGCCAGGCAAGTTTCACCAAGCCTTACAACCAGAGCGGACACACCCGAATCGGCACGTCCTATGGCAGCCTGGCC GACGGTGACGAAAGCCGGCACCTGAACTGGGCCGGTGTCGCCTGGAGCGGTCTGCCGGGGTTGACCAGCAGTCTCTATGCTTCCGAGCTCAAGGACATCT GGAACCAGTATTACTACGATCTGGACTACACCTACGCGCTGAATGATCGGATCAGCCTAAACCCGGGTCTGCACGCCTATCACACGCAAGACACCGGCAA TGCGCTGCTGGGCAACATCGACAACAACACCTACAGCCTGCATTTCACCGTCGGTGTGGATAACCACAGCGTTACCGCCGCGTATCAGCGGGTCAACGGC AACACGCCGTTCGACTACATCAGCCAGGGCGACAGCGTCTACCTCGACAATTCCCAGCAGTATTCGGACTTCAACGGCCCGAACGAACGCTCATGGAAAC TCAAGTACGCCTACGACTTTGTCGGGCTCGGCTTGCCCGGCCTGACCTCGGCGGTCTCTTACTCCCGAGGTGAACTGGACCTGACCAAGGTCGATCCGGA CAGCCCCGGTTACGCCTCGTGGTACAGCGCTGATGGCAAAAACGCCAAGCACTGGGAACGCGACATTGATCTCAAGTATGTGGTTCAGGGCGGCAAGGCC AAAAACCTGGCGCTACGTCTGCAATGGGCGACCAACCGTGGCGGCAACGGCTACGGCGCGCTGGATCAGGACACCGATGAATACCGGGTGATCGTCGACT ACCCGCTCAATGTCTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTTCAATTAGCAAAAGGCCAGCATGTTTTGCTGGCCTTTTTTTTATCCGGGATTTATACAGGCGCTCCGAACGCAAACGGTTTCTGGGATTTTGCCTGA GTCTTGCAAAACACTTTTATAACGCCTCATTAGCAGAAGTCAGAACCATGAGTGTGAGCAGTGCAACATCTCACCATCCGATCCGGTCGACGCGATCGGA GCGGCTTCTGGTTCTCGGCAGTTTGTTGCTGGTGATTGCGATATTGAGCATCGTGGCGTTCCTGATCATTCGCGAACGCGCCAATGCTGAACAGTCTGCC ACTCGCGCAGCAACCAATATCGTGCAACTGATCGACGCAGACGTGTTACGCAACGTCGAACTCTATGACCTGTCCTTGCAAGGCTTGATCGCAGCCTCGC AGCGTGAAGACCTGAAGAACGTTTCCCCTGCCATCCGCCATTTGGCCTTGTTTGACCGTGCCACTGCCGCGCCGTACAAGGGCGACATTTTGTTGCTGGA
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| Amino Acid Sequence |
>porin
MRFPLRFSPLFIAIAATVAPAAHAADDSNAEGFVEGSSLNLNARNYYMNRNRLQQTDDNIEWGQGFLGLFESGYTQGTVGFGVDAHAMLGLKLDGGGGTD NSSILPVSDGNGKAPGSFSTAGGTLKMRAFDTELKAGDLFLTNPMIAGGETRMLPQTFRGVSLTNHSFDSWMIEGGQASFTKPYNQSGHTRIGTSYGSLA DGDESRHLNWAGVAWSGLPGLTSSLYASELKDIWNQYYYDLDYTYALNDRISLNPGLHAYHTQDTGNALLGNIDNNTYSLHFTVGVDNHSVTAAYQRVNG NTPFDYISQGDSVYLDNSQQYSDFNGPNERSWKLKYAYDFVGLGLPGLTSAVSYSRGELDLTKVDPDSPGYASWYSADGKNAKHWERDIDLKYVVQGGKA KNLALRLQWATNRGGNGYGALDQDTDEYRVIVDYPLNVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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