Pseudomonas fluorescens C3, VC34_RS20070

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain C3 FCC4LTTACXX-wHAIPI007897-94_L5_1_(paired)_contig_23, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCCGGCAAGTCCTTGCTGGCCGTCTCCAGATCCATTTTCTGCAGCTCATCGTTGATCTCCTTGGCCTTGGCTGGGTTCTGCTCGGTGAGCTTGGCCACTT CCTTGGCCAGTTGTTCGCGCTTGATGGTGGCTTCTTCGGGTGGGCAAGCCCAAACGGGGAGGGCGCAGGCGAGGGTGGCGGCGAGGGTGAGTTTCAGCAT GGTTTTCATAAAGTCAGGCCTCGGTTCCGTGTCGGGCGGTTAATCGGTTGAGGCCGCGTGGTTGTGAAAGTTCACTCGTGATCAGCCCCGTAGAACGGTC CTCGGAAACGTCCTACCTATTGCTGACGCTTTCGACATCACTTCAAGACATTTCCCGCAGTTGAGCCGGAACCGTCCGGTTTAGGCGTTTCCGCTCGTCA ATTATGGTTTCTGGATCCAACCATTAATTGACGCCAGAGTAGTGGCCATCTAGTATCGCGCCACTATTGTGCCATCAGCCTTCATTTCAAAGGATCGAAC
DNA Sequence for Gene
>VC34_RS20070
ATGTATCCACCCGCCCTCGTGGCGAGGTTGTGCCTGGCTTTGCTGTGCCTTTCTCCGCTAAATCTTGCTCACGCCGCCCCCACCCCCGGTGAAACCGATC TGATCCGAGAACGCCAGGATCGCCTGCTCGAAGAGCAGCGTCGGAGGCTCGAAGAACTCAAGGAATTACCCGGCAAGGAAGCCAAACCCGCCGTACCAAC GGCACCCGCTGACACCCGCTGTTTCCCCATCAAGGACATCGAACTCAAAGGCGCCGACAGTCTCTCCGAGAGCGAAAAAAGTCGTCTGCTCAAGCCGTAC ATCGGCCAATGCCTGGGCGTCACTCAGCTCAACGAACTGCTGAAAGTCATCACCGACCACTACATCGAAAAAGGTCTGGTCACCAGTCGTGCCTACTTGC CGCAGCAGGATTTGTCCGGCGGGCATTTGAAGGTGCTGGTGGTCGAAGGCAAGCTCGAAGGGTTGAAAGGCGCGGAGGACAGCAAGCTGTCGGACCGTGA ACTGGGCATGGCTTTTCCCGGCAAGACTGGCGAGTTGGTCAACCTGCGGGAAATCGAGCAACTGGTCGATCAGCTCAACCGTTTGCCATCGAATCAGGCG CAGATGGAGTTGGCGCCGGGCAAGAACGTCGGCGGCAGTGAAGTGCTGGTCAAGAACACCCCGCAGAAGCCGTGGCGTGCCGGGTTGTCCCGCAGCAACG ACGGCCAGCGCAGCACCGGCGAGCAGCAGTGGGGCACGACATTTGATTGGGACAGCCCGCTGGGTTTGGCGGATCAGTTGATGTTGCGCGGCGGTCACGA TGCGATGACCGATCACCAGCACACCTCCAACAACGCGATGCTCAATTACAACCTGCCGTGGGGCTGGTGGAACTTCAATTACACCTACAGTCAGAGTGAG TACCGCTCGCAGGCTCAAGCCAATGGCTTCAATTTCAAGCAGACCGGCGATAGCGAAAACCATCAGCTGCACGCCGAGCGGGTGATCCATCGTGATGCCG TGAGCAAGACCTCCCTCAGCACCGGTCTCTCTTACCTGCGCACCAACAACTTCATCGAAGACAGCAAGCTCAAGCTGAGCAGCAACCGTATCAGCGAAGC GCAGTTCGGCATCAACCACGGTCGGCGAGTCGGCAGTGCGTTCGTCAACATTGACCTCGGTATGCAGCAAGGTATCGGCGCGTTCGATGCGCAGGGCAAC GGTCACCCAGGCCCCGGCGAACCGAATGCGCGCTACCGCAAATACACCGCCACCGCGAGCTACCTGCAACCGTTCAAGGTGTGGGACGAGTCCTTCATTT TCAGCAGCCTGATGACCGGCCAGCGCAGTGAAGACGTGCTGTTCAGCCCACAGCGCACCAGCCTCGGCGGGCAATCGTCGATCCGTGGTTACAAGGACCA ATCCTTGTCCGGCGACAGCGGCGGCTACTGGCGCAACGACCTGCGCTGGACCCGTCCGGTGACCCTGGAATGGATGCGCCCGGTCTTCGCCGAATACGGC GCCAGTCTCGGTTACGACCAGGGCGTAATTCGTGGCGATCGCTACAACGGCGATCAGCACGGGCGCATGTCGAGCAACTCAGTGGAGCTGTTTGCCCGTG GTCAGCACCTGGCCGCCAGCGTGACTTTTGCCCATTCCCTCGAACGTCCGGACACCCTGGCCGAGCGCGAAGCGCCGATCTATTTCCGCGTGGATTTCTT CCTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTTTTGCTTTAGCGAGATTCAAATCATGGACGTTCGCCATCACGCCTTCCTCGCGCGCCAGCCTTCTGCGGACCTGAAAGCCCGAGAACACTTCTGGGGC ATGCCCAAACGCGGGTTGGCGTTCCTGTTGGCCAACGTCATGTTCTGGCAGCCGATGTGGGCGCAGGCCGACGGGATTGTGGTGGCCACGCCAGGTACCA GTCTCGGCCAGGCGGGCAACGGTGTACCGATAATCCAAATCGCCACGCCTAACGGCAGCGGCCTGTCGCATAACCAGTTTCACGATTACAACGTCGGCAC CCAGGGTGTGATCCTCAACAACGTCGCCGCGCAGACCGGGGCGACACAACTGGGCGGCATCATCGTCGGCAACCCCAACCTCACCAACCGGGTCGCCGCG CAGACCATCCTCAACGAAGTGATCGGCGGCAGCCCCAGCCAATTGCGCGGTTACACCGAAGTAGCGGGGCAGTCGGCGCGAGTGATCGTCGCCAACCCTT
Amino Acid Sequence
>ShlB family hemolysin secretion/activation protein
MYPPALVARLCLALLCLSPLNLAHAAPTPGETDLIRERQDRLLEEQRRRLEELKELPGKEAKPAVPTAPADTRCFPIKDIELKGADSLSESEKSRLLKPY IGQCLGVTQLNELLKVITDHYIEKGLVTSRAYLPQQDLSGGHLKVLVVEGKLEGLKGAEDSKLSDRELGMAFPGKTGELVNLREIEQLVDQLNRLPSNQA QMELAPGKNVGGSEVLVKNTPQKPWRAGLSRSNDGQRSTGEQQWGTTFDWDSPLGLADQLMLRGGHDAMTDHQHTSNNAMLNYNLPWGWWNFNYTYSQSE YRSQAQANGFNFKQTGDSENHQLHAERVIHRDAVSKTSLSTGLSYLRTNNFIEDSKLKLSSNRISEAQFGINHGRRVGSAFVNIDLGMQQGIGAFDAQGN GHPGPGEPNARYRKYTATASYLQPFKVWDESFIFSSLMTGQRSEDVLFSPQRTSLGGQSSIRGYKDQSLSGDSGGYWRNDLRWTRPVTLEWMRPVFAEYG ASLGYDQGVIRGDRYNGDQHGRMSSNSVELFARGQHLAASVTFAHSLERPDTLAEREAPIYFRVDFFL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site