Pseudomonas fluorescens C3, VC34_RS18925

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003911 DNA ligase (NAD+) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03119
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03119
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03119
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.150.20 - - - 524 605 7.7E-25
Gene3D G3DSA:6.20.10.30 - - - 398 448 1.2E-12
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 65 322 9.2E-100
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 611 695 2.0E-11
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 465 484 1.4
Coils Coil Coil - - 1 21 -
NCBIfam TIGR00575 JCVI: DNA ligase (NAD(+)) LigA IPR001679 NAD-dependent DNA ligase 11 608 0.0
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 1 620 0.0
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 499 518 2400.0
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 326 406 9.59E-28
FunFam G3DSA:1.10.150.20:FF:000006 DNA ligase - - 524 602 1.7E-23
Pfam PF00533 BRCA1 C Terminus (BRCT) domain IPR001357 BRCT domain 704 775 4.9E-10
CDD cd00114 LIGANc IPR013839 NAD-dependent DNA ligase, adenylation 7 324 0.0
Pfam PF03120 NAD-dependent DNA ligase OB-fold domain IPR004150 NAD-dependent DNA ligase, OB-fold 329 405 3.9E-34
Hamap MF_01588 DNA ligase [ligA]. IPR001679 NAD-dependent DNA ligase 2 778 51.613853
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 2 324 4.86E-118
Gene3D G3DSA:1.10.150.20 - - - 449 523 1.2E-28
PANTHER PTHR23389 CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 - - 17 761 6.3E-50
Gene3D G3DSA:1.10.287.610 Helix hairpin bin - - 1 64 1.8E-28
Pfam PF01653 NAD-dependent DNA ligase adenylation domain IPR013839 NAD-dependent DNA ligase, adenylation 4 324 3.8E-127
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 609 783 1.7E-29
Gene3D G3DSA:3.40.50.10190 BRCT domain IPR036420 BRCT domain superfamily 703 782 3.5E-22
SUPERFAMILY SSF52113 BRCT domain IPR036420 BRCT domain superfamily 705 780 6.54E-17
FunFam G3DSA:2.40.50.140:FF:000012 DNA ligase - - 324 397 2.3E-34
SMART SM00292 BRCT_7 IPR001357 BRCT domain 704 781 1.4E-8
CDD cd17748 BRCT_DNA_ligase_like - - 707 777 3.52398E-23
SMART SM00532 ligaN3 IPR013840 NAD-dependent DNA ligase, N-terminal 3 467 0.0
Gene3D G3DSA:1.10.150.20 - - - 617 695 3.2E-8
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 531 550 140.0
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 411 603 2.82E-54
Pfam PF14520 Helix-hairpin-helix domain - - 465 518 0.0036
Pfam PF12826 Helix-hairpin-helix motif IPR041663 DisA/LigA, helix-hairpin-helix motif 529 592 1.6E-19
FunFam G3DSA:3.30.470.30:FF:000001 DNA ligase - - 65 322 4.1E-107
Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type 414 453 1.2E-10
FunFam G3DSA:1.10.150.20:FF:000007 DNA ligase - - 449 523 2.1E-29
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 324 397 2.8E-32
FunFam G3DSA:1.10.287.610:FF:000002 DNA ligase - - 1 64 2.8E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.