Pseudomonas fluorescens C3, VC34_RS03355

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004673 protein histidine kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50341
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50341
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47226
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 432 556 6.47E-14
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 762 893 5.1E-16
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 1686 1819 4.32E-23
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1500 1686 8.6E-51
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1847 1960 9.5E-36
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1591 1605 1.8E-9
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 10 99 3.2E-6
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 627 720 1.4025E-9
FunFam G3DSA:3.30.565.10:FF:000016 Chemotaxis protein CheA, putative - - 1502 1686 5.2E-60
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1070 1191 1.26E-27
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 629 718 1.3E-14
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1503 1684 5.24E-35
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1212 1342 5.6E-30
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1070 1167 4.8E-6
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 627 750 6.54E-28
SMART SM00260 chew_2 IPR002545 CheW-like domain 1679 1823 4.7E-25
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 908 1030 2.06E-14
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 627 760 2.8E-29
Coils Coil Coil - - 1153 1173 -
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1070 1168 6.05004E-13
Coils Coil Coil - - 1463 1486 -
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 770 836 1.00479E-7
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 1692 1821 7.8E-21
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 627 724 4.7E-7
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 1550 1686 1.2E-13
PANTHER PTHR43395 SENSOR HISTIDINE KINASE CHEA - - 629 750 0.0
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 909 1035 2.1E-12
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1846 1964 7.68E-37
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1849 1960 6.0E-27
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1212 1310 2.91361E-13
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 767 889 1.96E-18
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1671 1684 1.8E-9
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 1546 1687 4.2E-24
MobiDBLite mobidb-lite consensus disorder prediction - - 604 625 -
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1647 1665 1.8E-9
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1212 1332 4.84E-28
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 14 125 4.3E-10
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 766 863 0.011
Pfam PF02895 Signal transducing histidine kinase, homodimeric domain IPR004105 Histidine kinase CheA-like, homodimeric domain 1363 1500 7.6E-6
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 770 854 2.1E-11
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 1761 1821 7.7E-20
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1214 1313 9.3E-14
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1069 1201 5.9E-29
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 7 130 1.05E-21
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1072 1172 1.7E-13
Coils Coil Coil - - 1393 1420 -
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 1849 1960 1.35282E-32
Gene3D G3DSA:3.40.50.2300 - - - 1849 1968 4.0E-40
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1212 1309 6.0E-7
SMART SM01231 H_kinase_dim_2 IPR004105 Histidine kinase CheA-like, homodimeric domain 1362 1501 6.8E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.