Pseudomonas fluorescens C3, VC34_RS01560
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C3 FCC4LTTACXX-wHAIPI007897-94_L5_1_(paired)_contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGCCATCATCTGCGGCAAAGTGGTGATCGGCGAGAACGTCTTCGTCGGTCCTTACGCGGTGATTCGTGCCGACGAAGTGGATGCCTCAGGCGAGATGG AACCGATCACCATCGGCGCCAACTCGAACATCCAGGATGGCGTGGTGATCCACTCCAAGTCCGGCGCGGCAGTGACCATCGGCGAGTTCAGTTCCATCGC CCACCGCTCGATCGTTCATGGTCCGTGCAAGGTTGGCGACCGGGTGTTTATCGGGTTCAACAGCGTGCTGTTCAACTGCGTCGTCGGTGACGGTTGCGTG GTTCGGCACAACTCGGTGGTCGATGGTCGCGACTTGCCCGAAGACTTCTACGTGCCCTCCACCACCCGCATCGGCCCAAAGACAGATCTGTCGCAGTTCC CACCGGTGAGCGTCAGCGCCTCGGAGTTTTCCGAGGACGTGGCGCGTACCAACGTCGACCTGGTACGCGGCTACAAAGCCTTGCAGAACGAGTTCTGACC
|
|
| DNA Sequence for Gene |
>VC34_RS01560
ATGAGCAGCGTGCTGATTCGCAATGCCCGGTTGGTGAATGAAGACCGTGAGTTTGACGGTGAACTGTTGGTGAGCAACGGTCGAATCGTGAAGATCGCCA GCAGCATCCACGGTGAAAATGCCGACGTGGAAATCGATGCACAAGGGCAATGGCTGCTGCCCGGAATGATCGACGACCAAGTGCACTTCCGCGATCCAGG CTCGCCAGACAAGGGCAGCTTCTACACCGAATCCCGGGCGGCGGTGGCCGGTGGCATCACCAGCTTCATGGACATGCCCAACACTAATCCGGCGACCCTG ACCCTCAGCGCACTGGCCGACAAAAAGCGTCGCGCGGCGATCAGTTCCGTCGCCAATTACGGCTTTCATTTCGGCGTGAGCAACGACAATCTCGACACCG TCGCCAGGCTTAATCCCTGTGAAGTCGCCGGCGTCAAAGTGTTCATGGGCGCTTCCACCGGCAACATGCTGGTCGATGACCCAAAGATTCTGGAGCGGTT GTTCGCCGAGGTGCCGACCCTTTTATTGGCCCACTGCGAACACACGCCCAGTATCGAGGCCAATGCCGCGAACCTGCGTGACCTGTTCGGCGAACACATT CCTGCTGCGGCCCACCCGCTGATCCGCAACGCCGAGGCCTGCTTTCGCTCATCCTCTATGGCCGTGGACCTGGCCAAGCGTCACGGCACCCGACTGCATG TTCTGCACCTGACCACCGCCCGCGAACTGGCGTTGTTCGAGGACAAGCCGCTGGCCCACAAACGCATCACCGCCGAAGTCTGCCTGCACCACTTGCTGTT CGATGACAGGGATTACCCGAGCCTCGGCAACCTGATCAAGTGCAACCCGGCGATCAAAACCCAGGCCGACCGCGATGCCTTGCGCCAAGCCTTGTTGAGC CATCGGCTCGACGTGATCGGCAGCGATCACGCGCCCCACACCTGGGCTGAAAAACAGCGACCGTACAGCCAGGCGCCTTCCGGTTTGCCGTTGGTGCAAC ACGCCCTGCCCGCGTTGCTGGAACTGGTCGCGGATGAAGTGTTGCCGATCACTACGCTCGTCGCAAAAACCAGTCACCGGGTCGCCGATCTGTTCGCCAT TCCCGACCGCGGTTATCTGCGTGAAGGCTATTGGGCCGACCTCGTTCTGATCAAACCGGAACCTGGTGGCGTCGCCGTTTCCCAGCAACCGATCCTGTCT CAATGCGGCTGGACACCTTTTGCCCGCAAGCGTTTCCGGCACAGCGTCAGCACCACGATCGTGTCGGGGCAAATTGCCTGGCACGACCAACGTCTTAATG ACAACTGCCTGGGTTTACCACTACGGTTTATGCGCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CACTCGAGAGCACCGACATGATTCATATCACCCTGAGCGATGGTTCATTGCGTGAATACGACCAGCCACTGTCGGTGTACGAACTCGCCGCGAGTATCGG ACCCGAGCTGGCAAAAGCAGCGGTGGCCGGTCGAGTGGACGGCATCCTGGTGGACTGTGAGTACATGATCGAGGTCGACGCCCGGGTCAGCATCGTCACG CCTCAAGAGCCCGACGGGCTGGAGATCCTGCGACGCTCCTGTGTGCTGATGCTGGCCATGGCCGTTAAGCAACTCCATCCACAGGTGCAACTGCACACAG GAACGGCGCTGGGCGACGGGTTCTTTCATGAGTTTTCTGTCGAGCGATCCTTAACGCAGGCAGACCTGCCACTGATCGAAGCCCGCATGCAGGCTCTGGC GGCGACCAATCACTCGATTCGCCGTCAAGGAAAGACACCGCTGTACCGCCTGGGGAACTTCGAATCTACGACCGCTGGCCCACATGTCCCCGCGACCAGA
|
|
| Amino Acid Sequence |
>dihydroorotase
MSSVLIRNARLVNEDREFDGELLVSNGRIVKIASSIHGENADVEIDAQGQWLLPGMIDDQVHFRDPGSPDKGSFYTESRAAVAGGITSFMDMPNTNPATL TLSALADKKRRAAISSVANYGFHFGVSNDNLDTVARLNPCEVAGVKVFMGASTGNMLVDDPKILERLFAEVPTLLLAHCEHTPSIEANAANLRDLFGEHI PAAAHPLIRNAEACFRSSSMAVDLAKRHGTRLHVLHLTTARELALFEDKPLAHKRITAEVCLHHLLFDDRDYPSLGNLIKCNPAIKTQADRDALRQALLS HRLDVIGSDHAPHTWAEKQRPYSQAPSGLPLVQHALPALLELVADEVLPITTLVAKTSHRVADLFAIPDRGYLREGYWADLVLIKPEPGGVAVSQQPILS QCGWTPFARKRFRHSVSTTIVSGQIAWHDQRLNDNCLGLPLRFMR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|