Pseudomonas fluorescens C3, VC34_RS12805
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C3 FCC4LTTACXX-wHAIPI007897-94_L5_1_(paired)_contig_14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTGCGCGCTGAACCTCGAGCATCTGCTCGGCGTAATCGAGCACCTTGAGACCTTCGGGCGTCAGCGACACCCCGCGTGAATCGCGCACGAACAGACGCA AGCCCAACTCATCTTCCAGCGCGGCGATCCGGCTGGAGATCGCGGCCTGAGTGCTGAACATTTTCTCGGCGGTCAGGCTGAAGCTTTGCAGGCGGGCGAC CCAGACGAAGGTTTCGAGGAATTTGAGGTTCATGGCGGTTCCCTTGGCGCTTATGGCTCTTGTAATGAAGGGGCGAGTTGCAATTGTTACTCCAGAGTCC GCCATCGCGGGCATCAAATTTTCTTATGCATAACCTCGACTTTTTCCCGTTTGACGCCGTTCTGCCCCGGCACGAAGAATCCGCTCCACGACGCAGGTCG CCTGCGTCCGCCCCCCACGACAACGCCTTCACAAAAAAACAATGAGGCGTGTCCGTCATCTTCGTTTGCTGCCGCAGGAACCTCTTCCATGGGAAAAATC
|
|
| DNA Sequence for Gene |
>VC34_RS12805
ATGACTGTCCACGTGCCTTCAAAAGCGGATCGCACCCGCCCATTCAATGGGTGTGCCCCGGTTGGCACATTGCTCGGCCTGAGTCTGCTCTGTGCACCGG CCGCTCAGGCGGATTTCGTCGCGGACAGTAAGGGCAGCCTGGAAGCGCGCAACTTCTACTTCAACCGTGATTTTCGCCAGGAAGGTTCGCGCGACAAGGC CGAGGAATGGGCGCAGGGTTTTCTGTTGCGGATGGAGTCGGGTTACACCGCGGGCACGTTGGGGATTGGCCTGGATGTTTTGGGCATGGCCGGTTTCAAA CTGGACTCCGGTGGCGGTACGGCGGGGACTAATCTGTTGCCGCCGGATAGATCCGGCGGCTCGCAGGATCGCTATGGCGAGTTAGGCCTGACAGCGAAAA TGCGCGTGTCCAGCAGCACCCTGAAATTCGGGACGTTGCAGATCAAGGACCCGGTGGTGAGTTCCAACGATACCCGCCTGTTGCCGAGCACGTTCAAGGG CGGGCTGGTGAATGTGCAGGAAATCGATCGTTTGAAGCTCACGGGCGGTCAGCTCACGCAGATCAATTTTGTCGACTCCACCGACTATCAGGACATGACC GCCAACCGCATTGGCGGGCAGAGTGACAGGTTTCAGTTTGCCGGGGCTGACTATCAGTTCCTGCCGAACCTGACCGCGCAATACCGCTACGGCCAGCTGG AAAACATCTACCAGCAAAATTACCTCGGGCTTGTGCACACGCTGGACCTGGGCTCCGGGCAATCGCTCAAGAGCGACGTACGCTATGCGCGCAGCACCGA AGACGGCAACTTTCGTGATATCGACAACCAGGCCTTCGGTGCGTTGTTCACCTATAGCCTGGGCGGTCATGCGTTGGGTTTCGGTTATCAGCGCATGAGC GGCGACGATCCCTTTCCGTATATCGGGCGCAGCGATCCGTACCTGGTCAACTTCGTGCAGATCGGTGACTTCGCCAACATCGACGAGCATTCCTGGCAGG CACGCTACGACTACAACTTTGCCGCACTCGGTGTGCCGGGGTTGACCTTCATGACGCGCTACATCTCTGGCGACAATGTGCAACGCACTGCGCCGGGTGA AGGCAAGGAATGGGAGCGCAACACCGATATCGCTTACGTGGTGCAGGACGGTTCGTTGAAGGGGTTGGGCCTTAAATGGCGCAACGCGTCAGTGCGCTCG AACTTCGGTAATGACCTGGATGAGAACCGTCTGATCGTCAGCTATACCCTGGCGCTGTGGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ATGCTTGGCGGACTTTATATTCTATACAGGAATAAGCAAATCGATATTTATTCCTTTTAATATTAGTCTGGGGCGTGCATTTTGAAGGCCTGCACATCCG TGCGGATGTATTCGACATCAGACAGGAAGCCTCATCATGACCATCAAAGCGATCAACGTCCGCAACCAGTTCAAGGGTGTCATCAAGGAAATTGTGACAG GTGAAGTGGTCTCCGAAATCGATGTGCAAACCGCCTCCGGCATCGTCACCTCGGTGATCACCACCCGTTCAGTGCGCGATCTTGAATTGAAAGTGGGGAG CGAGGTGATTGCCTTCGTCAAATCCACAGAAGTCTCGATCGCCAAGCTCTGAAATGGCCAGGGCTTGAATCCGCGGAGCCGCTCACGTCAGGAAAAGGAC AGCCCCTGGCTCGCACGAATCAAGTCATAGGCCTTGCGGGCAATCAAGTTGGCGGTGTTGGGCCTGATCCACAGGTAGTAGGTCACGTCCGGCAGTCGCG
|
|
| Amino Acid Sequence |
>porin
MTVHVPSKADRTRPFNGCAPVGTLLGLSLLCAPAAQADFVADSKGSLEARNFYFNRDFRQEGSRDKAEEWAQGFLLRMESGYTAGTLGIGLDVLGMAGFK LDSGGGTAGTNLLPPDRSGGSQDRYGELGLTAKMRVSSSTLKFGTLQIKDPVVSSNDTRLLPSTFKGGLVNVQEIDRLKLTGGQLTQINFVDSTDYQDMT ANRIGGQSDRFQFAGADYQFLPNLTAQYRYGQLENIYQQNYLGLVHTLDLGSGQSLKSDVRYARSTEDGNFRDIDNQAFGALFTYSLGGHALGFGYQRMS GDDPFPYIGRSDPYLVNFVQIGDFANIDEHSWQARYDYNFAALGVPGLTFMTRYISGDNVQRTAPGEGKEWERNTDIAYVVQDGSLKGLGLKWRNASVRS NFGNDLDENRLIVSYTLALW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|