Strain | Pseudomonas fluorescens strain C3 FCC4LTTACXX-wHAIPI007897-94_L5_1_(paired)_contig_1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ACGACGGCCAACCCGCAAGCCCGGCCCGCAGTAACGAAGAAAAACTCAGGCAGGAACAAACGCGCACCAGCGCCCACAGCGTTTTGCTTGCCGTCCCCGA ACAGCTACTGAGTCGGTTGATGCTCGCGGCCCAGGCCGGCGTGTTGCGCCTGGCCGTACGCAGCGCCGATGAAAAACGTCTGGCTCGTTACTGGGCCGGC GAAAGCTATTCATCGGCCAACCTTGCCAGTACCAACCGCGAGTTGATCCAGTTCAGCCAACTGGCCATGACGCCCCCACCCAAGCCTGTCGTCACCCACG TCAGCACAGCACCGCGCAAGCTGAGCGTGGAAGTTATCCGCGGCAACGAAATCACCCAACAAACCCCCTGAATCGAGCAAGGACGCCTCTAAATGCGCAG TCGTTGCATGCCCCTGTTTCAAGCGCAACGATGACCCGAACTGGTATCACCTTAACTTCTTCGAAAACTGCAACTTCGATAAACGCAGCGGATTATCGCA
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DNA Sequence for Gene |
>VC34_RS00190
ATGAGCCAGAGCCAGAACCTGAGCCAGACCTTCCTCGCGATCACGCGCAACAGCACCGACCTTGAGTGGCTGCAAGGCGCCCTCGCCCCGTTGGGCCAAG TGGTCAGCGCCGGCGGTGGCAGCCTCGACGAATTGCTGGCGCTGGTGGACGTGACCTTCGCCAGCCTGGTGTTCATCGGCCTGGACCGCGAACACGTGGT GGCCCAAAGCGCACTGATCGAAGGTGCCCTGGAAGCCAAACCGATGCTGGCGATCGTCGCGCTGGGCGATGGCATGGACAACCAACTCGTGCTCAATGCC ATGCGCGCCGGCGCACGGGATTTCGTGGCCTATGGTTCGCGCTCCAGTGAAGTCGCGGGGTTGGTGCGACGGCTGAGCAAACGCCTGCCACCCGTGGCCC CGAACACCCAACTGGGTAGCCTGACGGTGCTCTACGGTGTGCAGATCAACGCTGACGGCGCGCTGCTCGCCACGCACATGGCGCAAGTGGTGCAGAAGAG CGGACAGCAAACGCTGTTGCTGGACCTTGGCCTGCCGCGCGGTGACAGCCTGGCCTTGCTCGGGCTGGAGAGTTCGTTCCACTTCGGCGATGCACTCAGG CACTTGCGGCGCCTCGACGCGACGCTGATCGACAGCGCGTTCACCAACTGCGCCGCCGGGTTGCGGATCCTCGCCTACGCCCACCACGATGAGCCGCTGG AACACACCAGCACCGCCGAGTTGTACATGTTGCTCAGCGCCCTGCGCCAACACTTCCAGCACATCGTGGTGAACCTGACTGGCCAGCCGGACAGCGAAGC GCTACGCACCTTCGTCACCCATTGCGACAAGTTGCTGTGGTACACCGATCAGAACGTACTCGACTGCCGCCGTAACCTGGCGGTACTCAACCTGTGGCGT GAAAAAGGCATGAAGCTCGATCACGCCAGACTGCTGGTGGATCGCTACCTGCGCAACGTCGCACCGGACTCCGAGACCCTGAGCAAAAGCTTCGGCATGG AGATCATCGCGACCCTCGTCTACAGCCCGGAAGTGCGGCTCAACGCCAAAAACCAAGGTGTGACGCTGTTTGAACTGGCCCCCCGCGAAGGCTTGACTCA AAGCCTGCGCGCCCTCGGCGATCAGTTGGCCAAGCGCTCCGAGGGCCTGGCCAAGCCCAAGTCTGGCTGGTTCAACCGGTTGAGGGGTGCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCGGTGAAAAACTCTTCGGTGCCCCTGTACGCACCACCACTGGCAACACTGACCACGAAGGTCTGAAACTGGTGCTGCACCGCTACATCATCGACGCCAT CGAGGAGTCCGGCAAAAACCTGCTGGAGGGTTCACGGCAGGTGCTCTCACAGTTCGTCATCGACAAGGTTGCCGAGTACATCGCCCGGCTGCACCTGGCG ATTTCCCGCTATGAAATGGAGCGTCTGGCCGAAGAAATCGTCGACGAACTCACCGGTTTCGGCCCCTTGGAAGTGCTGCTGCGGGACCCGGCGGTGACGG AGATTCTGGTCAACGGCCCGCACCGGGTGTTCATTGAACGCGACGGCATACTGCATCTAAGCGACCTGCGTTTCATCGATGCGCATCACGTCGAACGGGT CATGCAACGGATCCTCGCGCCCCTCGGCCGACGGCTCGACGAGTCGTCGCCAATGGTCGACGCACGACTGCCCGACGGTAGCCGGGTCAACGCGATCATT
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Amino Acid Sequence |
>pilus assembly protein
MSQSQNLSQTFLAITRNSTDLEWLQGALAPLGQVVSAGGGSLDELLALVDVTFASLVFIGLDREHVVAQSALIEGALEAKPMLAIVALGDGMDNQLVLNA MRAGARDFVAYGSRSSEVAGLVRRLSKRLPPVAPNTQLGSLTVLYGVQINADGALLATHMAQVVQKSGQQTLLLDLGLPRGDSLALLGLESSFHFGDALR HLRRLDATLIDSAFTNCAAGLRILAYAHHDEPLEHTSTAELYMLLSALRQHFQHIVVNLTGQPDSEALRTFVTHCDKLLWYTDQNVLDCRRNLAVLNLWR EKGMKLDHARLLVDRYLRNVAPDSETLSKSFGMEIIATLVYSPEVRLNAKNQGVTLFELAPREGLTQSLRALGDQLAKRSEGLAKPKSGWFNRLRGAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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