Pseudomonas fluorescens C3, VC34_RS00190

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain C3 FCC4LTTACXX-wHAIPI007897-94_L5_1_(paired)_contig_1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACGACGGCCAACCCGCAAGCCCGGCCCGCAGTAACGAAGAAAAACTCAGGCAGGAACAAACGCGCACCAGCGCCCACAGCGTTTTGCTTGCCGTCCCCGA ACAGCTACTGAGTCGGTTGATGCTCGCGGCCCAGGCCGGCGTGTTGCGCCTGGCCGTACGCAGCGCCGATGAAAAACGTCTGGCTCGTTACTGGGCCGGC GAAAGCTATTCATCGGCCAACCTTGCCAGTACCAACCGCGAGTTGATCCAGTTCAGCCAACTGGCCATGACGCCCCCACCCAAGCCTGTCGTCACCCACG TCAGCACAGCACCGCGCAAGCTGAGCGTGGAAGTTATCCGCGGCAACGAAATCACCCAACAAACCCCCTGAATCGAGCAAGGACGCCTCTAAATGCGCAG TCGTTGCATGCCCCTGTTTCAAGCGCAACGATGACCCGAACTGGTATCACCTTAACTTCTTCGAAAACTGCAACTTCGATAAACGCAGCGGATTATCGCA
DNA Sequence for Gene
>VC34_RS00190
ATGAGCCAGAGCCAGAACCTGAGCCAGACCTTCCTCGCGATCACGCGCAACAGCACCGACCTTGAGTGGCTGCAAGGCGCCCTCGCCCCGTTGGGCCAAG TGGTCAGCGCCGGCGGTGGCAGCCTCGACGAATTGCTGGCGCTGGTGGACGTGACCTTCGCCAGCCTGGTGTTCATCGGCCTGGACCGCGAACACGTGGT GGCCCAAAGCGCACTGATCGAAGGTGCCCTGGAAGCCAAACCGATGCTGGCGATCGTCGCGCTGGGCGATGGCATGGACAACCAACTCGTGCTCAATGCC ATGCGCGCCGGCGCACGGGATTTCGTGGCCTATGGTTCGCGCTCCAGTGAAGTCGCGGGGTTGGTGCGACGGCTGAGCAAACGCCTGCCACCCGTGGCCC CGAACACCCAACTGGGTAGCCTGACGGTGCTCTACGGTGTGCAGATCAACGCTGACGGCGCGCTGCTCGCCACGCACATGGCGCAAGTGGTGCAGAAGAG CGGACAGCAAACGCTGTTGCTGGACCTTGGCCTGCCGCGCGGTGACAGCCTGGCCTTGCTCGGGCTGGAGAGTTCGTTCCACTTCGGCGATGCACTCAGG CACTTGCGGCGCCTCGACGCGACGCTGATCGACAGCGCGTTCACCAACTGCGCCGCCGGGTTGCGGATCCTCGCCTACGCCCACCACGATGAGCCGCTGG AACACACCAGCACCGCCGAGTTGTACATGTTGCTCAGCGCCCTGCGCCAACACTTCCAGCACATCGTGGTGAACCTGACTGGCCAGCCGGACAGCGAAGC GCTACGCACCTTCGTCACCCATTGCGACAAGTTGCTGTGGTACACCGATCAGAACGTACTCGACTGCCGCCGTAACCTGGCGGTACTCAACCTGTGGCGT GAAAAAGGCATGAAGCTCGATCACGCCAGACTGCTGGTGGATCGCTACCTGCGCAACGTCGCACCGGACTCCGAGACCCTGAGCAAAAGCTTCGGCATGG AGATCATCGCGACCCTCGTCTACAGCCCGGAAGTGCGGCTCAACGCCAAAAACCAAGGTGTGACGCTGTTTGAACTGGCCCCCCGCGAAGGCTTGACTCA AAGCCTGCGCGCCCTCGGCGATCAGTTGGCCAAGCGCTCCGAGGGCCTGGCCAAGCCCAAGTCTGGCTGGTTCAACCGGTTGAGGGGTGCGCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGGTGAAAAACTCTTCGGTGCCCCTGTACGCACCACCACTGGCAACACTGACCACGAAGGTCTGAAACTGGTGCTGCACCGCTACATCATCGACGCCAT CGAGGAGTCCGGCAAAAACCTGCTGGAGGGTTCACGGCAGGTGCTCTCACAGTTCGTCATCGACAAGGTTGCCGAGTACATCGCCCGGCTGCACCTGGCG ATTTCCCGCTATGAAATGGAGCGTCTGGCCGAAGAAATCGTCGACGAACTCACCGGTTTCGGCCCCTTGGAAGTGCTGCTGCGGGACCCGGCGGTGACGG AGATTCTGGTCAACGGCCCGCACCGGGTGTTCATTGAACGCGACGGCATACTGCATCTAAGCGACCTGCGTTTCATCGATGCGCATCACGTCGAACGGGT CATGCAACGGATCCTCGCGCCCCTCGGCCGACGGCTCGACGAGTCGTCGCCAATGGTCGACGCACGACTGCCCGACGGTAGCCGGGTCAACGCGATCATT
Amino Acid Sequence
>pilus assembly protein
MSQSQNLSQTFLAITRNSTDLEWLQGALAPLGQVVSAGGGSLDELLALVDVTFASLVFIGLDREHVVAQSALIEGALEAKPMLAIVALGDGMDNQLVLNA MRAGARDFVAYGSRSSEVAGLVRRLSKRLPPVAPNTQLGSLTVLYGVQINADGALLATHMAQVVQKSGQQTLLLDLGLPRGDSLALLGLESSFHFGDALR HLRRLDATLIDSAFTNCAAGLRILAYAHHDEPLEHTSTAELYMLLSALRQHFQHIVVNLTGQPDSEALRTFVTHCDKLLWYTDQNVLDCRRNLAVLNLWR EKGMKLDHARLLVDRYLRNVAPDSETLSKSFGMEIIATLVYSPEVRLNAKNQGVTLFELAPREGLTQSLRALGDQLAKRSEGLAKPKSGWFNRLRGAQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site