Pseudomonas fluorescens C1, VC33_RS13265

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046983 protein dimerization activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.10 - - - 36 262 3.1E-46
Gene3D G3DSA:1.20.5.1930 - - - 570 659 1.1E-12
PANTHER PTHR24421 NITRATE/NITRITE SENSOR PROTEIN NARX-RELATED - - 283 797 1.1E-63
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 437 570 1.43E-18
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 704 797 5.0E-9
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 707 796 1.0E-7
CDD cd00130 PAS IPR000014 PAS domain 346 437 3.0723E-5
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 46 267 8.69E-34
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 668 796 2.1E-30
Gene3D G3DSA:3.30.450.20 PAS domain - - 332 454 7.8E-21
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 45 266 5.8E-17
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 323 446 7.1E-12
CDD cd16917 HATPase_UhpB-NarQ-NarX-like - - 709 794 4.63093E-33
Pfam PF07730 Histidine kinase IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain 600 666 4.6E-13
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 46 264 7.2E-25
SMART SM00091 pas_2 IPR000014 PAS domain 452 525 7.1
Coils Coil Coil - - 572 603 -
Pfam PF13426 PAS domain IPR000014 PAS domain 339 439 3.9E-9
CDD cd01007 PBP2_BvgS_HisK_like - - 43 263 2.48097E-47
SMART SM00086 pac_2 IPR001610 PAC motif 531 572 19.0
Gene3D G3DSA:3.30.450.20 PAS domain - - 455 569 3.1E-18
SMART SM00091 pas_2 IPR000014 PAS domain 327 393 0.073
Gene3D G3DSA:3.40.190.10 - - - 130 225 3.1E-46
Pfam PF08447 PAS fold IPR013655 PAS fold-3 480 561 1.8E-12
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 472 579 1.1E-7
SMART SM00086 pac_2 IPR001610 PAC motif 400 440 4.3
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 673 794 3.14E-19
CDD cd00130 PAS IPR000014 PAS domain 472 569 0.00433315
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 339 449 2.65E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.