Pseudomonas fluorescens C1, VC33_RS06215 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C1 FCC4LTTACXX-wHAIPI007895-92_L5_1_(paired)_contig_4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGAGACCACACCAATCATTTTCGCGGTCGGGCTGAGGTTCTTGTAAGCATGGATCGCCCCACCGGGAATATGCACGTAGCCCCCGGCTGACACCGTGGTG GACGTGCCCGCTACCGTCACTTCGACCTCGCCGTCGACCACATAGAACGCTTCATCCCACGGATGAAAGTGCGGCGGCGGCCCGCCACCTTGCACGCCTT CCTGAATGTGCATTTCAAAAGGCTTGCTCAGATCGCCGCCGGCGAGAATCGTGATCGCCTCGCCGACGACATTCACCGGTGACGGCGTTTGGGCTTGCTC GATGATGTGAACCGTTCGCATGATTGCTCTCCGCAGGATGAATCCGCACTGGCTGAGTATATTCACCCGCGAGCCGTCGGGTGCCGCGCCTGAGGCCCGT TTGTCCGGGCGGTTTGAATGCCGATGGAATTTTTATCTGGCCCGGTTGCTCTGCTGATTAGAGACGCCTTCATGACGGCGGCATCGGCAGCAGGTATGCC
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| DNA Sequence for Gene |
>VC33_RS06215
|ligD
ATGAACAAGACCCTGGATGACTACAACCGCTTGCGCGATTTTTCGGCGACCTCAGAGCCCGTCGCGACCAAACGCCTGGCCAAAAAAAACGCGAAAGACC ACGCGTTGCAGTTCTGCATTCAGAAGCACGACGCCTCACGCCTGCATTACGACTTTCGGCTGGAACTTGAGGGGGCGCTGAAAAGCTGGGCGGTGCCTAA AGGCCCGTCCCTGGACCCCAAGGTCAAGCGTCTGGCGGTTCACGTCGAAGACCATCCGCTCGATTACGCGACGTTTGAGGGCAGCATTCCCGAAGGGCAT TACGGCGCGGGCGATGTGATCGTGTGGGACCGCGGTGTGTGGATTCCGCAGGAGGATCCAGTCAAGGCCTACGCCAAGGGCAAGCTCAAGTTCGAACTGC AAGGCGAGAAGCTTGGCGGTCTATGGAACCTGGTGCGCACGCACATGCCGGGCAAACAGGAGCAATGGTTTCTGATCAAGCATCAGGACAGCTCGGCCAA GCCCGAGAGCGATTACGACGTGGTCACCGCCGAGCCCGACAGCGTGCTCAGTGATCGGACCCTCCTGGCCAAACAATCGAAGTCGACGGTTAAACCCAAA CCCGTCAAGCAACCGGCACGCAAAGTGGCGACTAAAGAGGCATCGGCGCCACTCACCGGCGCTCGCAAAGCCAAACTGCCAGAGCAGCTCAAACCCGAAC TGGCCACGTTGGTGGAGAAGGCTCCGGACGGTCAGTGGCTTTACGAGATCAAGTTCGACGGTTACCGGATCATGGCCCGCATCGACCACAGCGACGTCAG GCTCTTCACCCGTAACGGTCACGACTGGACCCACAAACTGCCCAGACAGGCCGAAGCATTGGCGGCATTGGGCCTCGAATCGGCCTGGCTTGACGGTGAA ATGGTGGTGGCCAACGAGCAGGGCGTACCGGACTTTCAGGCGCTGCAAAATGCCTTCGACGCCGGTGCCAGCGCCAACATCGTGTACTACTTGTTCGACC TGCCTTATCTCAACGGCGTGGACCTGCGCGAGGTGCCGGTCGAAGAACGCAGGGTGGCGCTGTCGACCGTGCTCAAACTCAATCATGACCCGCTGCTGCG CTTCTCGGATTCTTTCGCTGAAGCACCAGACGCCTTGCTCAACAGCGCCTGCCAAATGCAGATGGAAGGGTTGATCGGCAAGCGCATGGGCTCACCTTAT GTGTCACGACGCAGCAGCGACTGGATAAAGCTCAAGTGCAAACATCGGCAGGAATTCGTGGTGGTCGGCTACACCGATCCGAAAGGGTCGCGTCATGCAT TCGGTGCCTTATTGCTCGGGTTGCACGACCGTGACAGCGCTCAATTGCGTTACGCCGGGAAGGTTGGCACCGGATTCAACGAGACGACGCTCAAGCGCAT CTTCGAACAGCTCAAACCCTGGCAGACGAAGAAGCCGTCGGTGGTCAACCCACCTAGCGGTTTCGAGGCCAAGGGTGTGCACTGGCTCAAGCCCACGCTG CTGGCCGAAGTGGCGTTTGCTGAAATGACCAAGGAGGGCTCGGTGCGCCATGCGGTGTTCCATGGCCTGCGCGAAGACAAACCCGCCAAAGGCATCACTG AGGAGCGTCCCCACGTGGTGAAGACCCCAGAGAAAAAAACCGCCGGTGCGCAACCTGCACCGTCGCAGGCTGGCCTGGTCAAGGGCGAGGTGCGCATCAC CCACCCCGACCGGGTGATCGACGCCACCACCGGGACCACCAAAGTTCAGTTGGCCGAGTATTACGCCAGCGTTGTGCAGTGGATTTTGCCCGAGCTCAAG GACAGGCCCGTGGCACTGGTTCGGGCACCGGAGGGGATCGCTGGTGAGTTGTTTTTCCAGAAAAATGCCGAGCACCTGGCCATTCCAGGCATCACCACGC TGGACAAGGCACTCACCGGTCAACCGGTGATGATCATCAACAACGCCCAAGCGCTGATTGGCGCCGTGCAAATGAGTGCCGTGGAGCTGCACACCTGGAA TGCCACCGCCGATAATCTCGAGCGGCCCGATCGTTTCGTGCTCGACCTTGATCCGGACCCGGCGCTGCCCTGGAAAAGCATGGTCGAGGCGACTCAGCTT ACGCTGGCGGTGCTTGATGAACTGGGGCTCAAGGCCTTCCTCAAAACCAGCGGCGGCAAGGGTATTCACCTGGTGGTGCCGCTGACCCGCAAGCAGGGTT GGGACGAGGTGAAGGACTTCAGCCATGCGATTGTCAGCCACATGGCGAAGCTGTTGCCGGAACGCTTTTCTGCCGTCTCGGGGCCGAAGAATCGGGTCGG GCGGATCTTCATCGATTACCTGCGCAACGGTCTGGGTGCCACCACCATTTGCGCCTACGCCGTGCGTACTCGTGAAGGTTTACCGGTGTCGGTGCCAATC TTTCGCGAGGAAGTGGCCGAGCTCAAAGGGGGGAACCAATGGAACGTGCACAATGTGCATGAGCGACTGGCCGAGGTGGGTGAGGGGCCTTGGGCGGGCA TGAGGAAAACCCGGCAGACGATTACGGCCGAGATGCGGCGACGGGTGGGGATGAAAAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGGCAGTGAGGATGCCGGCGCCCCTTCAACAGGGCGCCAGCCGGCGCTCTTTGTTACTTGATGAATTGCAGGAGGTCGGAGTTCAGCTTGTCGATGGCC GCTTTAAAATCCTTGGCAGTGACGTTCTGGCTTTCGTTTTCCAGGGTGGTACCAAAGACCTTGCGCACGACTCTGCCCACGGTCTGGTTGGTTCTGGCAT CGACGAATTCAGCTTCGATATACAGTTCGGTGTCCTGGTCACGATGACCGGTGGCTGCCTGTGTCGCCCCGACAACGGCAGCGATCGGCACCACTTCATA CCACTTCATGCCTTCGTTCGAGGCGCTGACCCCGGTGATCGCCGCGCGCAAGATCAAGGTCCTGGAGCCGGCCGGTGCTGACGCCGAGTTGGTCACAACC CGGTATTTGGTGCCCAGCGTGGCTTTGGCTTTGCTGGTCATGTAGCTCTGAATATCGGCCAGCGTCTGCTGATTCACCCGCTCGTTGGGTTTCGGCGCCG
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MNKTLDDYNRLRDFSATSEPVATKRLAKKNAKDHALQFCIQKHDASRLHYDFRLELEGALKSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGH YGAGDVIVWDRGVWIPQEDPVKAYAKGKLKFELQGEKLGGLWNLVRTHMPGKQEQWFLIKHQDSSAKPESDYDVVTAEPDSVLSDRTLLAKQSKSTVKPK PVKQPARKVATKEASAPLTGARKAKLPEQLKPELATLVEKAPDGQWLYEIKFDGYRIMARIDHSDVRLFTRNGHDWTHKLPRQAEALAALGLESAWLDGE MVVANEQGVPDFQALQNAFDAGASANIVYYLFDLPYLNGVDLREVPVEERRVALSTVLKLNHDPLLRFSDSFAEAPDALLNSACQMQMEGLIGKRMGSPY VSRRSSDWIKLKCKHRQEFVVVGYTDPKGSRHAFGALLLGLHDRDSAQLRYAGKVGTGFNETTLKRIFEQLKPWQTKKPSVVNPPSGFEAKGVHWLKPTL LAEVAFAEMTKEGSVRHAVFHGLREDKPAKGITEERPHVVKTPEKKTAGAQPAPSQAGLVKGEVRITHPDRVIDATTGTTKVQLAEYYASVVQWILPELK DRPVALVRAPEGIAGELFFQKNAEHLAIPGITTLDKALTGQPVMIINNAQALIGAVQMSAVELHTWNATADNLERPDRFVLDLDPDPALPWKSMVEATQL TLAVLDELGLKAFLKTSGGKGIHLVVPLTRKQGWDEVKDFSHAIVSHMAKLLPERFSAVSGPKNRVGRIFIDYLRNGLGATTICAYAVRTREGLPVSVPI FREEVAELKGGNQWNVHNVHERLAEVGEGPWAGMRKTRQTITAEMRRRVGMKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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