Pseudomonas fluorescens C1, VC33_RS05210

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain C1 FCC4LTTACXX-wHAIPI007895-92_L5_1_(paired)_contig_4, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CAACGCAGCCTGACTGCCTTGAGCGTCAAGCACGGGGAAGAAGCCCTTCTGCTGCCAGGCATGCTTGCCAAAGGCATCGTAAAACAGGCGGGTCGGTGCT GCGGCCGTTCGGCGATCGCCATCGTAGACCGGCACTTTGGTCGCGCCACGTGCCGCCCCTTCGCCACTGCCCAGGTTGAGCTGACAGGCGGCATCGTTGC AGGCATGGCAGGCCACGCACTTTTCAGTAAAGATCGGTTGAATGTCCCGGCTGTAGGAAATAGCGGTGGAAATGGCCGGACCTTGCGCCGCGGCGTCCCA GCTTAGAAGCAGCATAAAAATGCTGGTGATGACGCGATACGACATATCCCTGGTCCCAATCTTGAAAAATCGCCGCGATTCTACCGGGCAGGCACCCTGT CCAACATGAACGATATTCATGCAAAACCGGGGCATGCTCTAAAAGCGCACAGGTTTGCTATGATCCGGCCCCTTCGTCATGGTCTTTCCGAGTAGTCCAA
DNA Sequence for Gene
>VC33_RS05210
ATGTCCGATCGCAGTGTTCGCCTTCAAGCTCTCAAGCACGCCCTCAAAGAGCGCATCCTGATTCTCGATGGCGGCATGGGCACGATGATCCAGAGCTACA AGCTCGAAGAGCAGGATTACCGTGGCAAACGTTTTGCTGACTGGCCAAGCGATGTCAAAGGCAACAACGACCTTCTGGTGCTGACTCGCCCGGATGTGAT TGGTGGCATCGAAAAAGCCTACCTGGACGCCGGCGCCGACATCCTGGAAACCAACACCTTCAATGCCACCCAGATTTCCCTGGCCGACTACGGCATGCAG GGCCTGGCGTACGAGTTAAACGTAGAAGGCGCACGCCTGGCCCGCAAGGTGGCCGACGCCAAGACCCTCGAAACCCCGGACAAGCCGCGCTTCGTCGCCG GTGTACTGGGCCCGACCAGCCGTACCTGTTCGTTGTCGCCAGACGTGAACAATCCTGGCTACCGCAACGTGACCTTTGATGAGTTGGTGGTGAACTACAC CGAATCCACCAAAGGCCTGATCGAAGGCGGCGCCGACCTGATCCTGATCGAAACCATCTTCGACACCCTGAACGCCAAAGCCGCGATCTTCGCCGTGCAA GGTGTGTTCGAAGAGTTGGGCATCGAGTTGCCGATCATGATCTCCGGCACCATTACCGATGCTTCTGGCCGAACCCTGTCCGGGCAAACCACCGAAGCGT TCTGGAACTCCGTGGCGCACGCCAAGCCCATCTCGGTCGGTCTGAACTGCGCCCTCGGCGCCCGCGAACTGCGCCCGTACCTGGAAGAGCTGTCGAACAA GGCCAGCACCCACGTTTCCGCGCACCCGAACGCCGGCCTGCCGAACGAATTCGGTGAGTACGACGAGTTGCCGGTGGACACCGCCAAGGTCATCGAAGAG TTCGCTCAAAGTGGCTTCCTGAATATCGTCGGCGGCTGCTGCGGCACCACCCCGGGCCACATCGAAGCCATCGCCAAAGCCGTGGCCGGTTACGCACCGC GTCAAATCCCGGAAATCCCCAAGGCCTGCCGTTTGTCGGGCCTGGAACCGTTCACCATCGATCGCAGCTCGTTGTTCGTCAACGTCGGCGAGCGGACCAA CATCACCGGCTCCGCGAAGTTCGCCCGCCTGATCCGTGAAGACAACTACACCGAAGCCCTGGAAGTTGCCCTGCAGCAGGTCGAAGCCGGCGCGCAGGTG ATTGACATCAACATGGACGAAGGGATGCTCGATTCGAAGAAGGCCATGGTGACCTTCCTCAATCTGATTGCCGGCGAGCCGGACATCTCCCGCGTACCGA TCATGATCGACTCCTCCAAATGGGAAGTGATCGAAGCCGGCCTGAAATGCATTCAGGGCAAGGGCATCGTCAACTCGATCAGCATGAAAGAAGGCGTCGA GCAGTTCATTCATCACGCCAAGCTGTGCAAGCGCTACGGCGCCGCGGTTGTCGTAATGGCGTTCGACGAAGCCGGCCAGGCCGACACCGAAGCGCGTAAA AAGGAAATCTGCAAACGTTCCTACGACATTCTGGTCAACGAAGTGGGCTTCCCGCCGGAAGACATCATTTTCGACCCGAACATCTTCGCCGTCGCCACCG GTATCGAAGAACACAACAACTACGCTGTGGACTTCATCAATGCTTGCGCCTACATCCGCGACGAACTGCCGTATGCCCTGACCTCGGGCGGCGTGTCCAA CGTGTCGTTCTCGTTCCGTGGCAACAACCCGGTGCGCGAGGCGATTCACTCGGTGTTCCTGCTGTATGCGATCCGCAACGGCCTGACCATGGGTATCGTC AACGCCGGCCAGCTGGAGATCTACGACCAGATCCCGCAAGAGCTGCGCGATGCCGTCGAAGACGTGATCCTCAACCGCACCCCGGAAGGCACCGACGCCC TCCTCGCCATCGCCGACAAATACAAAGGCGACGGCAGCGTCAAGGAAGCCGAGACCGAAGAATGGCGCGGCTGGCCGGTCAACAAGCGTCTGGAGCATGC GCTGGTCAAGGGCATCACCACCCACATCGTGGAAGACACCGAAGAATCTCGCCAATCGTTCGCCCGCCCGATCGAAGTGATCGAAGGCCCGCTGATGTCC GGCATGAACATCGTCGGCGACCTGTTCGGCGCCGGCAAAATGTTCCTGCCCCAGGTGGTGAAATCCGCCCGCGTGATGAAGCAGGCCGTGGCGCACTTGA TCCCGTTCATCGAACTGGAAAAAGGCGACAAGCCAGAAGCCAAGGGCAAGATCCTGATGGCCACGGTAAAAGGCGACGTGCACGACATTGGCAAGAACAT CGTAGGCGTGGTGCTGGGCTGTAACGGCTACGACATCGTCGACCTCGGCGTGATGGTCCCGGCGGAAAAAATCCTGCAAGTGGCCAAAGAGCAGAAGTGC GACATCATCGGCCTGTCCGGCCTGATCACGCCTTCGCTGGATGAAATGGTCCACGTCGCGCGCGAAATGCAGCGCCAGGAATTCTACCTGCCGTTGATGA TCGGTGGCGCGACCACCTCCAAAGCCCACACGGCGGTAAAAATCGAACCCAAGTACAGCAACGACGCGGTGATCTACGTGACGGACGCCTCCCGCGCCGT GGGCGTGGCGACACAATTGCTGTCCAAGGAACTGAAACCGGCATTCGTCGAGAAAACCCGCCTGGAATACATCGACGTTCGCGAACGCACGGCCAACCGC AGTGCCCGCACCGAACGCCTGAGCTACCCGGCAGCCATTGCCAAGAAGCCGCAGTTCGACTGGAGCACTTACGCGCCGGTCAAACCGACGTTCACCGGCT CCAAAGTGCTGGACAATATCGACCTCAAAGTCCTGGCCGAATACATCGACTGGACGCCGTTTTTCATCTCCTGGGACCTGGCCGGCAAATTCCCGCGCAT TCTCGAAGACGAAGTGGTTGGCGAAGCCGCTACCTCGCTGTACGCCGATGCCCAGGAAATGCTCGCCAAGTTGATTGACGAAAAGCTGATCAGTGCCCGC GCAGTGTTTGGCTTCTGGCCGGCCAACCAGGTGCGTGAAGATGACATTGAAGTCTACGGCGATGACGGCAAGGCGATTGCCAAGCTGCATCACCTGCGCC AGCAAATCATCAAGACCGACGGCAAACCGAACTTCTCGCTGGCCGACTTTGTCGCGCCCAAAGACAGTGAAGTGACCGACTACGTGGGCGGTTTCATCAC CACCGCGGGCATTGGCGCCGAAGAAGTGGCCAAGGCTTATCAAGACGCGGGCGACGATTACAATTCGATCATGGTCAAGGCACTGGCCGACCGGTTGGCC GAGGCCTGCGCCGAATGGCTGCACCAACAGGTCCGTAAAGACTATTGGGGTTATGCCAAGGACGAGACGCTCGACAACGAGGCGCTGATCAAAGAGCAAT ACACCGGCATCCGCCCTGCTCCGGGCTACCCGGCCTGCCCGGATCACACCGAAAAATCCACGTTGTTCAAACTGCTGGACCCGGAAGCCGAAGAGCTGAA GGCCGGTCGCAGCGGTGTGTTCCTGACCGAGCACTACGCGATGTTCCCGGCAGCGGCGGTCAGTGGCTGGTACTTCGCTCACCCGCAGGCGCAGTACTTT GCCGTGGGCAAGATCGACAAGGATCAGGTGCAGAGCTACACCTCGCGCAAAGGCCAGGAATTGAGCGTCACCGAACGCTGGTTGGCACCTAACCTCGGTT ACGACAACTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTCAGCTACCTGGCCACAATACTGTGGCCAGCAGTGATTCCCTTGTGGGAGCGAGCCTGCTCGCTCCCACAGTTGTTTGTGTCCGCCGTAGGTCTATGCT TATGGCTCAAACATAAATGACGGGGGATGTATGGACGATCCAGTCGACAACAAGCCGCCAACCTTCTGGCAAATGCTGCACAGCGTCATGGCAGCAGCGT TCGGGGTGCAGAGCGGGAAGAACCGGGCCCGGGATTTCACTCACGGCAAACCGAGTCATTTCGTGATTCTGGGGATTTTGTTCACAACGGTGTTCGCGCT GATCCTGTACGGCATCGTGCAACTGGTGGTGCATCTGGCCGGGGTCTAGCGCATCAGTGTTTGCAGGGTGAACGGGTAGCGGTAGGACGTCGGCCGCCCT TTGGCTGAGAGTCGACGGAAGTTCACGCCGTAGTCCGGCGTTGCCCCCATGGCCAGCATTCGCTTGGCTTGCGCCTTGTCGATCAGTTGCAACAACGGTA
Amino Acid Sequence
>methionine synthase
MSDRSVRLQALKHALKERILILDGGMGTMIQSYKLEEQDYRGKRFADWPSDVKGNNDLLVLTRPDVIGGIEKAYLDAGADILETNTFNATQISLADYGMQ GLAYELNVEGARLARKVADAKTLETPDKPRFVAGVLGPTSRTCSLSPDVNNPGYRNVTFDELVVNYTESTKGLIEGGADLILIETIFDTLNAKAAIFAVQ GVFEELGIELPIMISGTITDASGRTLSGQTTEAFWNSVAHAKPISVGLNCALGARELRPYLEELSNKASTHVSAHPNAGLPNEFGEYDELPVDTAKVIEE FAQSGFLNIVGGCCGTTPGHIEAIAKAVAGYAPRQIPEIPKACRLSGLEPFTIDRSSLFVNVGERTNITGSAKFARLIREDNYTEALEVALQQVEAGAQV IDINMDEGMLDSKKAMVTFLNLIAGEPDISRVPIMIDSSKWEVIEAGLKCIQGKGIVNSISMKEGVEQFIHHAKLCKRYGAAVVVMAFDEAGQADTEARK KEICKRSYDILVNEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFINACAYIRDELPYALTSGGVSNVSFSFRGNNPVREAIHSVFLLYAIRNGLTMGIV NAGQLEIYDQIPQELRDAVEDVILNRTPEGTDALLAIADKYKGDGSVKEAETEEWRGWPVNKRLEHALVKGITTHIVEDTEESRQSFARPIEVIEGPLMS GMNIVGDLFGAGKMFLPQVVKSARVMKQAVAHLIPFIELEKGDKPEAKGKILMATVKGDVHDIGKNIVGVVLGCNGYDIVDLGVMVPAEKILQVAKEQKC DIIGLSGLITPSLDEMVHVAREMQRQEFYLPLMIGGATTSKAHTAVKIEPKYSNDAVIYVTDASRAVGVATQLLSKELKPAFVEKTRLEYIDVRERTANR SARTERLSYPAAIAKKPQFDWSTYAPVKPTFTGSKVLDNIDLKVLAEYIDWTPFFISWDLAGKFPRILEDEVVGEAATSLYADAQEMLAKLIDEKLISAR AVFGFWPANQVREDDIEVYGDDGKAIAKLHHLRQQIIKTDGKPNFSLADFVAPKDSEVTDYVGGFITTAGIGAEEVAKAYQDAGDDYNSIMVKALADRLA EACAEWLHQQVRKDYWGYAKDETLDNEALIKEQYTGIRPAPGYPACPDHTEKSTLFKLLDPEAEELKAGRSGVFLTEHYAMFPAAAVSGWYFAHPQAQYF AVGKIDKDQVQSYTSRKGQELSVTERWLAPNLGYDN
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site