Pseudomonas fluorescens C1, VC33_RS03730
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C1 FCC4LTTACXX-wHAIPI007895-92_L5_1_(paired)_contig_4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGGCCTGGAAAGCCAGCTGCGAGAACCCACCCGCCGCATCGACACGCACGATCGAAGGGGCCTGATCGATCACCTGCGGCTCGGCATCGGCCCGCACT TTGCCGGCGCGCAGCGAATTGACGCAGCCCAGAATTCGGTACAAACCATGGGAGGCACAGCCATCGCGCTCGCCAGCAATCACCGTGGCGGCTACCGCTT GGGCGTGTGCAGCGTTGAAACCGTTGTGCAGCAGGATCGATTCGGCCAGCGTGCGGGCTTCGATCAGGGACAGTCGGATCATAATCAACTCCTTGGACAG ACCGTCCAGACTGGCCCATTCCAAGCGTTGCGGCTTGATCGCTTTAGGCAAGGTTGATGACGAATTGGGCATACCCGTAGTGCCGTTACACCAAGCGATC ACTCGGATTTTTCCTACACATCAGTGGCTTCATGCCTACAAAGTGTTGGCCTCTAGTGCGGCACTATCAGGTCATATTTCTATAATGAAGATCATTTGCG
|
|
| DNA Sequence for Gene |
>VC33_RS03730
ATGAATAAACCTTCGCTCCGCGCACTGGTTCTTGAGGACCATCCCTTTCAGCGAGCGTTTGCAGTCAAGGTACTCCAACACTTGGGGTGCACCGAGATCT TCCAGGCTGAAGACGGATCACAGGCGCTGGCACTGTTACAACAGGTGGGCGCCGTGGATATCACGCTGTGCGATCTGCGAATGAATGGCATGGATGGCCT GGAATTCTTGCAGCAGGCCAGCCACTCCAATTTGGTCGGCGCGATCATCATCAGCAGTTCGATGTCTTTGGATCTGCGGTATTCGGTACAGAAAATTATC TCTTTGTTGGGTATGCAGTTACTGGGCGATGTCGGCAAACCCCTGCAACCGGAAGTGTTGGCACCGTTATTGGAGAAGTACTCGGCCAGCTCATACAAGC CCTCCAGTCGAGCCCCGGACCTGGTCCTGCCTGATTGCCAGGAAGTCACCCAGGCCTTGCGTGACCATCAGATCAAGGCGTATTACCAGCCAAAAATCAA TCTGCGTACCGGCGAGATGTATGGCGTCGAAGTACTCGCCCGGTGGCTACACCCCATCAAGGGCATTTTATCGCCCGCGGTCTTCCTGCCGACGCTTGAG CGGTGCGAGATGATGGACGAGTTGCTGTTCGACCAGTTGAACCAGGCCTTGGCGCTGCAGAAACAATTGCGCGAAAAAGACATCGCCCTGAATTTCGCTT TCAACCTGCAAACGTCTCAACTGGTGGGCGGTCAACTGACGCAGCGGATCAAATCGGTACTGGATCACTTCGACCTGCCAGGCGATGGCCTGACGTTTGA GTTGACCGAGGGCGGGCTTTTGGACGCGACAGCGGCCAGCCTTGAAACACTGGTTCGGCTTCGCATGATGGGTTGCCAACTGTCCATTGATGACTTTGGC GCCGGATTTTCCTCCTTGAAGCGCTTGTGCCAGTTGCCGTTCAACGAAATCAAACTGGATGGCGAGTTCGTGCGCACCTTGCACGAGCCACGCTGCCAGG CAGTTATCAGCAGCACGCTCGCACTGGGCGACTCATTGGGCATGTCAGTTGTCATCGAGGGGATCGAAACCCTGGAGCAACGAGACACGCTGCTTGATCT GGGTTGTTCAAGGGGGCAAGGATATTTTTATGCCAGCCCCATGAGCAGTGCAGATTTGCTGTCGCGTCTATCCCCTGCCTCTCTCCCATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACCCCGTGCAAACGCCAGAAACGACGAAGGCCCCATAGGGGCCTTCTTTTTTGCAGCACTGTTTCAGCAGGCAGTGGCGCTAAATTCAACGCTATTGGGA GACAGGAGCAGCAGCGCCCTCCTCGGCATTGATGTTCAGCACCTGGGCACAGGATGGCGGCAAGAACAGATACGACTGCGCAACTTTATTGTCGTCGAAC ATCACCTTGTACTGGCAAACCATTGGCTCGCGTGTTCCGGGCCGTGGGAATTTGAAGAGGTAGTCCCACTCGCGAACGTTGAACATGGCTTCGGAGAAGT GCGGCAAACCAATCAGTTCATAAAGCTGCGGCTTGGTCAGGCCGGGCACGACCTTGCGCAAGTTCTCCACGCTCACATAACTGCCTTCGGTACGGCTGGC ATCCTTGAGCGCCGGGAACACCGGGGCACTGGACTTGCCATGATCATCAACATGGCTTGGGTTGGTACCGCAACCTGCCAGCGTCGCGGCCAGGCACGCG
|
|
| Amino Acid Sequence |
>signal peptide protein
MNKPSLRALVLEDHPFQRAFAVKVLQHLGCTEIFQAEDGSQALALLQQVGAVDITLCDLRMNGMDGLEFLQQASHSNLVGAIIISSSMSLDLRYSVQKII SLLGMQLLGDVGKPLQPEVLAPLLEKYSASSYKPSSRAPDLVLPDCQEVTQALRDHQIKAYYQPKINLRTGEMYGVEVLARWLHPIKGILSPAVFLPTLE RCEMMDELLFDQLNQALALQKQLREKDIALNFAFNLQTSQLVGGQLTQRIKSVLDHFDLPGDGLTFELTEGGLLDATAASLETLVRLRMMGCQLSIDDFG AGFSSLKRLCQLPFNEIKLDGEFVRTLHEPRCQAVISSTLALGDSLGMSVVIEGIETLEQRDTLLDLGCSRGQGYFYASPMSSADLLSRLSPASLP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|