Strain | Pseudomonas fluorescens strain C1 FCC4LTTACXX-wHAIPI007895-92_L5_1_(paired)_contig_3, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CTGGCGTTCTACGGCATGTCGACCTTCGAAGGTCCGATGATGGCCATCAAGACCGTCAACTCGCTGTCTCACTACACTGACTGGACCATCGGCCACGTAC ACGCCGGTGCCTTGGGCTGGGTAGCGATGATCTCGATCGGCGCGATCTACCACATGATCCCGAAACTGTTCGGTCGCGCGCAGATGCACAGCACTGGCCT GATCAACACGCACTTCTGGCTCGCGACCATCGGTACCGTTCTGTACATCGCGTCGATGTGGGTCAACGGCATTACCCAGGGTCTGATGTGGCGTGCAATC AACGATGACGGCACCCTCACCTACTCGTTCGTCGAAGCGCTGCAAGCCAGCCACCCTGGTTTCATCGTTCGCGCCTTGGGCGGTGCGTTCTTTGCCAGCG GCATGCTGTTCATGGCCTACAACGTATGGCGCACCGTACGTGCCTCGAACCCGGCTGAAGCTGCAGCCGCCGAACAGATTGCTGTAGTTGGAGCTCACTG
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DNA Sequence for Gene |
>VC33_RS02850
ATGAAGCATGAAGCAGTCGAGAAGAATATTGGCCTGCTGGCCTTCTTCATGGTTATTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTTCCGCTGTTTT TCCAGGACGTCACCAACAAGCCGGTCGAAGGCATGAAGCCGCGTCCCGCCCTTGAACTGGAAGGCCGCGACATCTACATCGCCAACGGTTGTGTCGGCTG CCACTCGCAGATGATCCGCCCGTTCCGCGCTGAAACCGAACGTTACGGCCACTACTCGGTTGCCGGTGAAAGCGTCTGGGATCACCCGTTCCTGTGGGGT TCCAAGCGTACCGGTCCGGACCTGGCCCGTGTCGGCGGTCGTTACTCCGATGACTGGCAGCGTGCGCACTTGTACAACCCGCGCAACGTCGTGCCTGAGT CGAAAATGCCGGCGTACCCGTTCCTCGTGGAAAACAAGCTCGACGGCAAAGACACCGCCAAGAAAATGGAAGTCTTGCGCACGCTCGGCGTTCCTTACAC CGACGAAGACATCGCCGGTGCCAAGGATGCTGTGAAGGGCAAAACCGAAATGGACGCGCTGGTGGCCTATCTGCAAGGCCTGGGCACCATCATCAAAAGC AAACGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TTTAGATGGATATCGGGATGATTCGTGGCCTGGGCACCGTTGTTGTGATGGTGGCCTTCATCGGTCTGGCGTTGTGGGTGTTCAGCCCCAAGCGCAAGTC GGAGTTTGAAGACGCGACCTTGCTGCCTTTCGCGGATGATCCCGAAGCCATCAAGCACGTCGAGCAAGCTTCTAGGAGTAACAAAGAATGACTACGTTCT GGAGTCTGTACGTCACAGTCCTCAGTCTCGGCACCATCTTCGCCCTGACCTGGCTGCTGCTGTCCACCCGCAAGGGTCAGCGCACCGAGCAGACGGATGA AACGGTTGGCCACTCCTTCGACGGGATCGAGGAGTACGACAACCCACTGCCAAAATGGTGGTTCATGCTGTTCGTGGGCACCATCATTTTTGCCCTGGGT TACCTGGTGCTCTACCCGGGCCTGGGCAACTGGAAAGGCTTGCTGCCGGGTTACAACTACCTGGATAACGAGAAGCAGACCGCGTTCGCCAACGGCCAGG
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Amino Acid Sequence |
>cbb3-type cytochrome c oxidase subunit II
MKHEAVEKNIGLLAFFMVIAVSIGGLTQIVPLFFQDVTNKPVEGMKPRPALELEGRDIYIANGCVGCHSQMIRPFRAETERYGHYSVAGESVWDHPFLWG SKRTGPDLARVGGRYSDDWQRAHLYNPRNVVPESKMPAYPFLVENKLDGKDTAKKMEVLRTLGVPYTDEDIAGAKDAVKGKTEMDALVAYLQGLGTIIKS KR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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