Pseudomonas fluorescens C1, VC33_RS27340

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain C1 FCC4LTTACXX-wHAIPI007895-92_L5_1_(paired)_contig_24, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCGACAACCAGGTCAACCCGAAAACCGGGACCATCCGCGGTCGCGCTGTATTCGACAACACCGACGGCAGCTACACCCCGGGCCTTTATGCGCGCCTGAA ACTGGTGGGCAGCGGCACGTATTCCGCCGTGCTGATCAATGACGAAGCAGTGGGTACCGACTTGGGTAAAAAGTTTGTGCTGGTGATGGATGCCGACAAC AAAACGGCCTACCGCGCCGTCGAACTGGGTCCGAAGATCGAAGGTTTGCGCATCGTGCGTAGCGGTCTGAACAAGGACGACACGGTCATCGTCAAGGGCC TGCAACGGGTTCGCCCTGGCTCGCCGGTCACCCCTGAAGTGATCCCGATGGCCAGCGAACAAACCATCGCCGCCCTGGCTCAACAACGACAAGCGCTGGA AGCCAGCAACCTGCCCCAAGTCGCACCTGCCAAGGTCGCGCCGGGTTCGGTTGTGAAACTGGCTGCTGCGACCCCACGCGGTTAAGGGACAAAAACTCCG
DNA Sequence for Gene
>VC33_RS27340
ATGAATTTTTCTCAATTCTTCATTTCACGGCCGATCTTCGCAGCGGTGCTGTCGCTGCTGATCCTGATCGCCGGCGCCATCTCGCTGTTCCAGTTGCCGA TCAGCGAATACCCGGAAGTCGTGCCGCCCACCGTTGTGGTCCGTGCCAACTTCCCGGGCGCCAACCCTAAAGTCATTGGTGAAACCGTGGCCGCTCCGTT GGAGCAAGCCATTACCGGCGTCGAGAACATGCTGTACATGTCCTCGCAGTCCACCGCCGATGGCAAAATCACCCTCACCATCACCTTCGCGCTGGGCACT GACCTGGACAACGCGCAAGTGCAGGTGCAGAACCGCGTAACCCGCACCGAGCCCAAACTTCCAGAAGAAGTGACGCGCATCGGTATCACCGTCGACAAGG CTTCGCCCGACCTGACGATGGTTGTGCACTTGACCTCGCCGGACAAACGCTACGACATGCTCTACCTCTCCAACTACGCCCTGCTCAACATCAAGGATGA GCTGGCGCGCCTGGGGGGTGTCGGTGACGTGCAATTGTTCGGTATGGGCGATTACTCGCTGCGGGTCTGGCTCGATCCGAACAAGACCGCCTCGCGCAAC CTGACGGCAACCGACGTGGTGAGCGCGATTCGTGAACAGAACCGCCAAGTGGCCGCCGGTGCACTGGGCGCGCCGCCTGCGCCGAATGCCACCGCCTTCC AGTTGTCGGTCAACACTCAAGGTCGCCTGGTTTCTGAGGAAGAGTTCGAGAACATCATCATTCGCTCCGGCGATAACGGTGAAATCACTCGCCTCAAAGA CATTGCTCGCGTCGAACTGGGTTCCAGTCAGTACGCCCTGCGTTCCTTGCTGAACAACCAACCGGCCGTGGCGATCCCGATCTTCCAGCGTCCAGGCTCC AACGCCATCGAAATTTCCAATGAAGTTCGGGCAAAAATGGCCGAGCTGAAGAAGAACTTCCCTGAAGGCATGGATTTCAGCATCGTCTATGACCCGACGA TCTTCGTGCGCGGTTCCATCGAAGCGGTGGTTCATACCCTCTTCGAAGCGCTGATCCTCGTGGTGCTGGTGGTGATCCTGTTCCTGCAAACCTGGCGCGC CTCGATTATCCCGTTGGTAGCGGTGCCGGTTTCGCTGATTGGTACGTTTGCCGTCATGCACCTGTTCGGCTTCTCGTTGAACGCTCTGTCGCTGTTCGGC CTGGTACTGGCCATCGGTATCGTGGTGGACGATGCGATCGTGGTGGTGGAGAACGTCGAGCGAAATATCGAACTCGGACTGACGCCGGTCGAAGCAACCA AGCGTGCCATGCGTGAAGTGACCGGTCCGATCATTGCCACGGCGCTGGTGCTGTGTGCTGTGTTTATCCCGGCCGCGTTCATTTCGGGCCTCACTGGCCA GTTCTACAAGCAATTCGCCTTGACCATTGCGATCTCGACCGTGATCTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCACTGGCTGCCGTCTTGCTGAAA AGTCATGACGCGCCGAAAGACCGTTTCTCCAAGGTCCTCGACAAGATCTTCGGTGGCTGGTTGTTCCGTCCGTTCAATCGCTTCTTCGAGAAGGCCAGCC ATGGTTACGTCGGCACGGTGGGCCGGGTTATCCGCAGCAGCGGCATCGCCCTGCTGTTGTACGCGGGCCTGATGGTGTTGACCTTCTTCGGTTTCGCCAA CACCCCGACCGGTTTCGTACCCGGCCAGGACAAGCAATACCTGGTGGCCTTCGCTCAACTACCGGATGCCTCGAGCCTGGACCGTACCGAAGACGTGATC AAGCGCATGTCCGACCTGGCCCTGAAACAGCCTGGCGTGGAAAGTGCGGTGGCCTTCCCGGGCCTGTCGATCAACGGCTTCACCAACAGTCCTAACGCCG GCATCGTGTTCGTGACCCTGAAACCTTTCGACGAGCGCAAAGACCCGAGCATGTCCGCGGGTGCAATCGCCGGAGCCTTGAACGGTCAGTTCGCCGGGAT TCAAGAAGCCTACATGGCGATCTTCCCGCCGCCACCAGTACAAGGCCTGGGCACCATCGGTGGTTTCCGCCTGCAAATCGAAGACCGGGGCAACCTGGGC TACGAAGAGCTGTACAAAGAAACCATGAACATCATCAACAAAAGCCACAACGTGCCGGAACTGGCCGGCCTGTTCACCAGCTACACCGTGAACGTGCCCC AGGTCGATGCTGCCATCGACCGCGAAAAAGCCAAGACCCACGGCGTCGCCGTCAGCGACATCTTCGACACCCTGCAGATCTACCTGGGTTCGCTGTATGC CAACGACTTCAACCGTTTCGGTCGTACCTATCAGGTCAACGTTCAGGCTGAGCAACAGTTCCGCCTCGAATCCGACCAGATCGGCCAGCTGAAAGTGCGT AACAACAAAGGCGAGATGATCCCGCTGGCGACCTTCATCAAGGTCAGCGACACCTCCGGCCCAGACCGCGTGATGCACTACAACGGCTTCATCACCGCTG AAATCAACGGTGCGGCAGCCCCCGGCTACAGCTCCGGCCAGGCGGAAAAAGCCATCGAGAAACTGCTCAAGGAAGAACTTCCAAACGGCATGACCTACGA ATGGACCGACCTGACCTACCAGCAGATTCTGTCCGGCAACACTGCGCTGTTCGTGTTCCCGCTCTGCGTATTGCTGGCGTTCCTGGTGCTCGCGGCGCAG TACGAAAGCTGGAGCCTGCCACTGGCGGTGATCCTGATCGTACCAATGACGTTGCTGTCGGCCATTACCGGTGTGATCGCGTCGGGTGGCGACAACAACA TCTTCACCCAGATCGGCTTGATCGTACTGGTGGGGCTGGCCTGTAAGAACGCGATTCTGATCGTCGAGTTTGCCAAGGACAAACAGCTGGAAGGCCTCAA CCCGCTGGCTGCGGTGCTGGAAGCTTGCCGTCTGCGTCTGCGTCCGATCCTGATGACCTCCTTCGCGTTCATCATGGGTGTTGTGCCGCTGGTGTTCTCC AGTGGCGCCGGTGCCGAAATGCGTCACGCCATGGGTGTGGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGTCTGTTGCTGACGCCTGTGTTCT ACGTATTGATTCGCAACTTTGTGGAACGCGGTGAAGCGCGCAAAGCGGCCAAGGCCCTGAAACTGGAGTCGCATCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTTTGAAAGCTTTCCTGCCGAGCCTGCTGGCACTGGCCCTGTGTGCCTGTGCCGTCGGCCCGGACTATAAGACCCCAGCCACGGAGCCGGCCAACATCAC CGCCGCCACCGATGGCGCGGCCGGTCAGAAAAACTTCGACCGCTCGCACTTCGAAGGCATTTGGTGGCAGCAGTTCGAGGACCCGACCCTAAACCAGTTG GTCACTCAATCACTTCAAGGCAACCGGGATTTGCGCGTTGCATTCGCACGCTGGAAAGCGGCTCGGGCGATTCGCGATGATGTCAGCAACAACGCGATGC CGACCATCACCAGCCGAGTCAGCAGTGACCTGGGCAAGGGGCAAATCCCGGGCCAAACCACTGACCGGGTTAACAGTGAGCGCTACGACCTTGGCCTGGA CATGGCGTGGGAGATCGACCTGTTTGGCCGGATCCAGCGCAACCTGGAATCCGCCAACGCGGAACAACAGGCGTTCGAAGCCGATTTGTACCAACTGCAA
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MNFSQFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGT DLDNAQVQVQNRVTRTEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYALLNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVSAIREQNRQVAAGALGAPPAPNATAFQLSVNTQGRLVSEEEFENIIIRSGDNGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIEISNEVRAKMAELKKNFPEGMDFSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIELGLTPVEATKRAMREVTGPIIATALVLCAVFIPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK SHDAPKDRFSKVLDKIFGGWLFRPFNRFFEKASHGYVGTVGRVIRSSGIALLLYAGLMVLTFFGFANTPTGFVPGQDKQYLVAFAQLPDASSLDRTEDVI KRMSDLALKQPGVESAVAFPGLSINGFTNSPNAGIVFVTLKPFDERKDPSMSAGAIAGALNGQFAGIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLG YEELYKETMNIINKSHNVPELAGLFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQIYLGSLYANDFNRFGRTYQVNVQAEQQFRLESDQIGQLKVR NNKGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGAAAPGYSSGQAEKAIEKLLKEELPNGMTYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVIASGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQLEGLNPLAAVLEACRLRLRPILMTSFAFIMGVVPLVFS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNFVERGEARKAAKALKLESHQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site