Pseudomonas fluorescens C1, VC33_RS27090

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain C1 FCC4LTTACXX-wHAIPI007895-92_L5_1_(paired)_contig_24, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCTTCCCAACGCTGACTAGGGCCAGCCCACAAAAGAAGGAATTGCTGCCGTGGGGACATTCAATAAAGGCATTTCATACCTGTTGCTGATCGGATGTGCC GCCAGTTCGGTACTCAGCCTGAACGCTCAGGCCGATGGCAATGGCGTCATTACTCTCAAGCGCGATGTCCAGCCTATCCCCATTGGCCGTAACGGCGGCA AAGACCCCTATCCAACCACGGTCAATGCCAACCCTTCGGAACGCATCAATACAACCATGACCAACACTGAGTTGAGCGACGGTGAGTTCGCCAGCGTGGC CAGTGGTTCATCCATTCGCGGCAACATCAATCCAACCACGAACAGCATGCCTGGCCTTAACGTCGTCACCAACCCCAACGGCATGCCTGGTATGAGCGCC GGTCACGGTGGTGGCAGTGGTGCCGCGATTTCCGGAACCATCAATCGGGCAATGAGCTCCGGCCTGGCCCCACTGACCAGAATGGCCGGAGGTCAATGAC
DNA Sequence for Gene
>VC33_RS27090
ATGAATCGCAGCCTCATTTTCCTCGCCCTGTTCGCCAGCGCAAGCGCCATGGCCGACTCCGGCGTCGCCAGCATGAACAACGCCAACATCCAGGATTCCG GCGTCCAGTACAAAGGCAACTTCAACGTCAACCAGGCGGCCGGGGATCAGTTGCAACAAACCAACACCCGGGCTATCGCCATCGGCACCAATGCCGGCGC GTCCACCCACATCAACCAGAAAATCGATACCCCCGCCAACCCTTCGATGAACGCTACATCCACGATCGGTGGCACCTCTTTCAGTAATGGCAACGGTGTA CTGGGCGTTAACCAGAGCGCCGGGGCCAACAACCAAATGGCCAACGCAATGCGCGTCAGCATCAGTGCTGCACCGCAGAGCGTCGACGATAGCGCCCTGT CCCAGCAGAACGTGGCGTTGTTACCAAACTCAGGAGCAACTGGACCCCAAACCGGCAGTCGCCAGGTCGTTACCAGCGACCAGGCCTTCACCGGCAGCCG GGGGATTATCCAGGTGAACCAGAGTGCTGGGGTGGGGAACCGAATGGCTAACACCCTCAGCATCCGGGTCGCTGACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCAAACGCAGTGCGATTAGAAAGTACCAACACTTAACCAACTAATAAGCACGGAGAAACACCATGAAACCTACAATGGCCTTAAAACCACTGGTTTTCG CTCTCGCAGCAGTGATGGCAATCGCAGCACAAGCAGGCGGTCGTGATGATGATCACGGTCATGGCAACGGTCACGGCAACGGGCATAACAACCATCAGCC TAAGCACCCTACTTTTGAAGAAATGCTTTCAATCTCTGCCGGTGCCGGCGCCACTGTGATGGACCAACAGGACAGCAGTGACAACGGGGTATTGAACCAA GGCACCAAAAACGACGCTAGAGCTGACAGCTCGTTGAATAACTCCAACGGCAACATGGGCGCCAACGTTGCAGCCGGTGACGGCAACCAACAAGACAACG CCGCCGCTTTGGCCACTGCTGACGAAAGCTTTATCTTCGGTTCCGCAGTCGCTATTTCCAGCGCGACTCAAAACAACACCGGCAACACCGTTCTCAACTA
Amino Acid Sequence
>autotransporter adhesin
MNRSLIFLALFASASAMADSGVASMNNANIQDSGVQYKGNFNVNQAAGDQLQQTNTRAIAIGTNAGASTHINQKIDTPANPSMNATSTIGGTSFSNGNGV LGVNQSAGANNQMANAMRVSISAAPQSVDDSALSQQNVALLPNSGATGPQTGSRQVVTSDQAFTGSRGIIQVNQSAGVGNRMANTLSIRVAD
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site