Pseudomonas fluorescens C1, VC33_RS25225
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 225 | 398 | 1.6E-15 |
| Gene3D | G3DSA:6.20.270.20 | LapD/MoxY periplasmic domain | IPR042461 | LapD/MoxY periplasmic domain, C-terminal | 102 | 151 | 3.7E-21 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 415 | 643 | 6.4E-43 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 241 | 395 | 4.0E-19 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 415 | 645 | 3.01E-44 |
| Gene3D | G3DSA:3.30.110.200 | - | - | - | 22 | 99 | 1.9E-29 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 171 | 223 | 2.5E-6 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 234 | 390 | 1.2E-11 |
| Coils | Coil | Coil | - | - | 215 | 235 | - |
| CDD | cd06225 | HAMP | - | - | 174 | 218 | 8.89976E-4 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 405 | 646 | 4.5E-50 |
| Pfam | PF16448 | LapD/MoxY periplasmic domain | IPR032244 | LapD/MoxY, periplasmic domain | 23 | 145 | 5.8E-38 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 220 | 395 | 1.7E-28 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 237 | 389 | 7.41528E-22 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 168 | 219 | 3.2E-6 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 408 | 644 | 2.7E-10 |
| PANTHER | PTHR33121 | CYCLIC DI-GMP PHOSPHODIESTERASE PDEF | - | - | 145 | 645 | 1.8E-58 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 414 | 645 | 1.19197E-42 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 237 | 390 | 4.2E-19 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.