Pseudomonas fluorescens C1, VC33_RS24620
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C1 FCC4LTTACXX-wHAIPI007895-92_L5_1_(paired)_contig_21, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTTCCCAGCATTTGATCAGGCCCTTGTCCGGACCTTCCCACAATTCATCGCGGTTCAGGCCGGACCGGAGGGGGGCGTCAATGCTGCGGTGGATGCGCT GGTTCATTCTGGTTCCTTGAATTCGGGTTTTGTTGGACAGCTCCGCTGTACCCGTTGACGCTGGATGTTAGGGGGCGATGTAACGACTGGCAACAAGGTA TTTCCGAGTGTAGGAATGTGCTGTGCCGGAGGAGGACGGGGCTCATTGTTTGGGTTTTGTCGGCTACAAGACTACAGCGCCCGCCAGCATTAGGGTGTTA TGCCTTTGGGGGATGTTTAAGTACCTTGTAGGTAGGTCTCATTCCTACAATTGGCGGCGTAAAACGGGAAAGTTCCTACGGGTTTTGTCGGTTGCAGGCG CCCCTGCAGCAAAGGATCTCCCACAGGGTTATCGGTACGCCTAATTCCAGGTGTGCTTCATCCGTTCTTCTATACAGACTAATTTTTTGAGGAAAGCCCG
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| DNA Sequence for Gene |
>VC33_RS24620
GTGACCCAGCTGACATTGCTGTGCTTGCCCTATTCGGGCGCCAGCGCCATGGTTTTCAGCCGCTGGCGGCGCAAACTGCCGCAGTGGCTGGCGCTGCAAC CGGTGGAGCTGCCCGGCCGCGGCGCGCGGTTTGGCGAGCCGTTGCACACCGACATGCGGCGGCTGGCGCTGCAACTCGCACACGAACAAAAAGCCACGCT CAAAGCCCCTTATGCACTGTTCGGCCATAGCCTTGGGGCATTGCTGGCTTGTGAAATGGCCCATGCGTTGCGCTCGCTGGGCTGTCCGGAGCCCGTGGCG CTGTTCGCTTCAGGCACGGCCGCGCCGACAATGCGTGCTGACTATGATCGCGGTTTTGCCGAAGCGAAAACCGATACCGAGTTGATCGAGCAACTACGCA CGTTCAATGGCTCCCGCGAAGAGGTGTCGGCCAACGAAGAGCTGATGAGCCTGACGCTGCCGGTCTTGCGCGCCGACTTTTTGCTGTGCGGACGCTTCGA ACCGCAGCAGCGCCCCTTGCTTAAATGCCCGGTGCACGTGCTGGGTGGCAAGGCCGACCGCGCCACCACTGAACAGTTGATCGGCTGGAGCAAGGAAACC CACGGCAGTTTCTCCGTGGACATGCTGGCGGGTGGTCACTTCTTTATTCATGAGCAAGAGGCCAAGGTGTTGCGCGTGATCAAGGACCAGCTCGATGTTC ACCATCGCCGACATGCCCTGGCCGCCAGCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTGCAAAAAAATCGGGCGCTTGCTCCGGCGGCGCTCCGACGAATAAGCCCTGAAGAACACGCCCCAACCTCAATGCTGAACCCTTCCTGAAGAACCCT GCGATTCCCCCGTCTCACGCCGTTCCTTCGTTTACTCTGAAAAAATCGGGGCGTAAGCTTCGCGCGTTTTCATCAATAGCGGAGACCCACAGTGGGTACG TGTTCGAGTGACAGTAGTCGGCCGGTTTCAGTAACCGGCACCTTCTCGGCAAGCTAACGCGCAGCTTTTTTTGTGCCGTTGTCTCGCCGTACAGCGAGTA GCGGCCTCCCGGTCGAGCCAGTCCTGGCCCGGCTCCCGATGTCCTCTCATCGACACACTATCGTGTGATGGCGACTGCCCTGTCGTCATCGCCGCGACTC GACACGCCTGCTCGAAGGTTTCCCGGCTGACCCTGGGGCAACGCCATGAACCTGACCCTGCTAAAGGAATTCTTCGCCGGATTCCTGCGCACCCGCCACA
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| Amino Acid Sequence |
>thioesterase
MTQLTLLCLPYSGASAMVFSRWRRKLPQWLALQPVELPGRGARFGEPLHTDMRRLALQLAHEQKATLKAPYALFGHSLGALLACEMAHALRSLGCPEPVA LFASGTAAPTMRADYDRGFAEAKTDTELIEQLRTFNGSREEVSANEELMSLTLPVLRADFLLCGRFEPQQRPLLKCPVHVLGGKADRATTEQLIGWSKET HGSFSVDMLAGGHFFIHEQEAKVLRVIKDQLDVHHRRHALAASA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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