Pseudomonas fluorescens C1, VC33_RS22175
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0015562 | efflux transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0022857 | transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 495 | 497 | - |
| SUPERFAMILY | SSF56954 | Outer membrane efflux proteins (OEP) | - | - | 22 | 489 | 3.92E-114 |
| Coils | Coil | Coil | - | - | 213 | 233 | - |
| NCBIfam | TIGR01845 | JCVI: efflux transporter outer membrane subunit | IPR010131 | RND efflux system, outer membrane lipoprotein, NodT | 30 | 486 | 2.1E-130 |
| PANTHER | PTHR30203 | OUTER MEMBRANE CATION EFFLUX PROTEIN | - | - | 17 | 496 | 7.5E-99 |
| Gene3D | G3DSA:2.20.200.10 | Outer membrane efflux proteins (OEP) | - | - | 121 | 375 | 7.3E-128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 129 | 149 | - |
| Pfam | PF02321 | Outer membrane efflux protein | IPR003423 | Outer membrane efflux protein | 302 | 484 | 2.5E-32 |
| Coils | Coil | Coil | - | - | 84 | 111 | - |
| Pfam | PF02321 | Outer membrane efflux protein | IPR003423 | Outer membrane efflux protein | 85 | 277 | 1.8E-25 |
| Gene3D | G3DSA:1.20.1600.10 | Outer membrane efflux proteins (OEP) | - | - | 75 | 486 | 7.3E-128 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.