Pseudomonas fluorescens C1, VC33_RS21795

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain C1 FCC4LTTACXX-wHAIPI007895-92_L5_1_(paired)_contig_17, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGTCATCGCCGCGAACAGCAAAGCCGACAAGAAGAAGCCGCAGACCCAATACAAGGTTCAGCAAGGCGACTCGTTGTACATCGTCGCCAAACGTTTCAAT GTCGAGATGCAGCATCTCAAGCGCTGGAACCCGCGCGTCGGCCAGGCGTTGAAGCCTGGACAGATGCTGACGGTGTCTTCACCACGCTAAAAAATAGCCC CTGAAGTCAGGGGCTTTTTTTTGCCCGAAAAACGAACCAATCTCTTGTAGCAGCTGGCGAAGCCTGCGTCGGCCGGTCCGCGTTCGGGCGCAGCAGTCGT AAATTCAAACGGCGCGGTATGACAGGAAGACTGTGATTGCCGGATTACGACTGCTGCGCAGTCGGACGCAGGCTTCGCCAGCTGCTACAAGGGACCCGTA AGTCCAATTAACCCGGCATTACCCCCTGTCTTTTTCCTGTCGATACAAGCTGTTACTGTACGGCCCACAAAGCCCAAGCCGCCTGGATCGGATCCCTGAC
DNA Sequence for Gene
>VC33_RS21795
TTGAAGCGTCCCCTCCTCCTGCTCCTGATCAGCCTGGCCTTGAGCTCCACCGCAAGCGCGACGATCAGCGAAAGCCACGGTTATGCGCAGTTCGGCACGC TCAAGTACCCGGCCCGATTTACCCACTTCGACTGGGTCAACCCGCAAGCGCCCAAGGGCGGTACATTGCGGGTGATGGCGTTTGGCACCTTCGATACGCT CAATCCTTACACCTTCAAGGGCACGAGCCCGGTGACCACGCCGAATTTCCTGCAATACGGGATCAATGAGCTGAATGAACCGCTAATGGTCGGCACCGGC CAGTACGCACCGTCCGGCGACGAGCCGACTTCCAGTTATGGCCTGATCGCCCAGTCGTTGGAATACACCGAGGACCGCAGTTGGGTGGTGTTCAACCTGC GCCCCGAAGCGCGGTTCCACGATGGTTCGCCAATCACCGCGTACGACGTCGCGTTCTCCTACCGCATGCTGCTCAAGGAAGGTCATCCGCTGTACCGCAC CAGCCTTCAGGAAGTGTTGCGCGTCGACATCCTCAACCCGCACCGCGTTCGTTTCGTCTTCAAGCGCGCCGGCAATCCGTTGTTGATCCTGAGGCTGGGC GAATTGCCGGTGATGTCCCGGCACTACTGGAAAGGTCGCGACTTCAAGGCCACTACCTTCGAACCGCCACTGGGCAGCGGGCCGTATCGCATCACCTCGG TAACCCCCGGGCGGCAGATCGTGTTTGAGCGGGTTAAGGATTACTGGGGCAAAGACCTGGCGGTCAATCGCGGCAAGTACAACTTCGATCGTATGGAGGT CGAGTTCTACCGTGACAGCGATGTCGCCTTCGAAGCCTTCAAGGCCGGCGAGTTCGACGTTTACATCGAGCATCAGGCGAAGAACTGGGACAACGGTTAC AACTTCCCGGCGGTGCGTCGCGGCGAGGTGATCAAGTTGCAGATCCCGCATCAGATCCCGACCCAGAGCCAAGGCCTGTTCATGAATACCCGACGGCCGA CCTTGGCCGAAGTCAAGGTCCGGGAAGCGCTGGGCCTGATGTTTGACTTCGAGTGGACCAACCGAACGCTGTTCAGCGGGGCCTACAAGCGCGCCTTGAG TTATTACCCCAACAGCGAGTTTTCTGCGACCGGGCTGCCCGTTGGTCACGAATGGCTGATGCTCAAGCCGTATCGCGAGCAGTTGCCCGCCAAACTCTTC ACCGAGCCGTTCAGCCTGCCGCACACCGACGGCCGCGGCATTCCCCGGGAAACCCTGCGCAAAGCCCTTGGGCTGCTTGCTGAGGCCGGCTGGAAGCTCA ATGGCCAGCGCATACAGAACGCCGCTGGCCAACCGCTGCGATTCGAGATCCTGCTGGTCAACCCGAACCTGGAGCGCATCCTCCAGCCCTACGTCGAGAA CCTCGCCAGCATGGGTATCGACGCGCGACTTCGCACCGTCGACCGCGCCCAGTACAAACAGCGCCTCGATCAGTTCGATTTCGACATGATTCTGATGACG CTCAACCAGACCCTCAGCCCGGGTCTGGAGCAGTGGCAGTATTTCCACTCCAGCCAGGTCGGAATCAAGGGCAGTAAAAACTATGCCGGTATCGCCAACC CGGTGGTCGATCATTTGCTTGAACAATTGCTCGCTGCTCAAAGCCGCGATGAACAAGTGGCCGTGGGCAAAGCGCTGGACCGCGTATTGCTGTGGCAGCA CTACAGTATTCCCAACTGGTACCTCAATTATCACCGCCTGGCCTACCGTAATCGCCTGGCCTTCGTGACCACGCCGCCCTACACCCTGGGCCTGAGCGCG TGGTGGCTGAAATCTTCGGAGAAAGATCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AACCCGTACGCGCCCTGCTGTTGCAGGCCAGCGGTCTGCTGTTCGCCGGGCTGGCCTGCGCCGCCCCGCAACATGCCGTGACCCTTTACAACGAGCCGCC GAAGTACCCGGCCGATTTTAAATATTTCGACTACGTGAACCCGGATGCGCCCAAGGGCGGGATCTTCCGTCAGGCCGGTTTCGGTGGCTTCGACAGTCTC AACCCGTTTATCAGCAAGGGCGTGCCGGCCGACGACATCGGCATCATCTATGACACCCTCGCCAAACAAGGGCTGGACGAGCCATTCACCGAATATGGAC TGGTGGCCGGCAAGATCGAGAAAGCCCCGGATAACAGCTGGGTGCGTTTCTACCTGCGCCCCGAAGCGCGCTTCCACGACGGCCACCCGATCCGCGCCGA AGACGTGGTGTTCAGCTTCCAGATGCTGACCAAGGACGGCGCGCCGCTCTATCGCGGTTACTACAACGACGTTGCGGAAGCGGTCGCCGAAGACCCGCTG
Amino Acid Sequence
>ABC transporter substrate-binding protein
MKRPLLLLLISLALSSTASATISESHGYAQFGTLKYPARFTHFDWVNPQAPKGGTLRVMAFGTFDTLNPYTFKGTSPVTTPNFLQYGINELNEPLMVGTG QYAPSGDEPTSSYGLIAQSLEYTEDRSWVVFNLRPEARFHDGSPITAYDVAFSYRMLLKEGHPLYRTSLQEVLRVDILNPHRVRFVFKRAGNPLLILRLG ELPVMSRHYWKGRDFKATTFEPPLGSGPYRITSVTPGRQIVFERVKDYWGKDLAVNRGKYNFDRMEVEFYRDSDVAFEAFKAGEFDVYIEHQAKNWDNGY NFPAVRRGEVIKLQIPHQIPTQSQGLFMNTRRPTLAEVKVREALGLMFDFEWTNRTLFSGAYKRALSYYPNSEFSATGLPVGHEWLMLKPYREQLPAKLF TEPFSLPHTDGRGIPRETLRKALGLLAEAGWKLNGQRIQNAAGQPLRFEILLVNPNLERILQPYVENLASMGIDARLRTVDRAQYKQRLDQFDFDMILMT LNQTLSPGLEQWQYFHSSQVGIKGSKNYAGIANPVVDHLLEQLLAAQSRDEQVAVGKALDRVLLWQHYSIPNWYLNYHRLAYRNRLAFVTTPPYTLGLSA WWLKSSEKDQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site