Pseudomonas fluorescens C1, VC33_RS17615
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C1 FCC4LTTACXX-wHAIPI007895-92_L5_1_(paired)_contig_13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGAATAGCTGAAATCCTCACCGGCAAACCCCAGCCGCAGTCGTTTGACGCCGTGTCTCACCGTTGCCTCGACCCGGACTTCACCATTGCGCATGCGTCG GGTGATGTTTTCCGGCCCGGCCCAGAAGGTCGAATCCAGCCCACCCTCACGGGCCAGCGCATTGACCACGCCACCCTGAGCGGTTTCCGCCAGCAGGCGC AGTGCGCGGTATAGATTGGATTTACCGCTGCCATTCGGACCGGTAATCAGGTTCAAGCGGCCCAGTGGGATGACCAATTTATTGATCGAGCGGTAATTGG CCACCGCGAGGGTGTTGAGCATGTGCCGGTTCCTTGGGCGGGTTCAATAGGCGGGCATTGTCGGGTGCGCGCAGGCGTCTATGGCAAGTGTTTTAGGGTC AATCATGACAACTTTTTTCTTCATAAGTCGGGCGTGCAAGGTCACGACATTGTTCTAAGCTCTCTGTCGTGTTGTTCATAAAAAAGGCCAAGGAGTTTGC
|
|
| DNA Sequence for Gene |
>VC33_RS17615
ATGGCGGTTCCCGGATTGAAAGTCATCATGGCCTTGAGTGTCGCAATGCTGCTGACGGCATGCGACGAGAAAAAACCGATTCAGGAGTACCTGCCAAGGG TATTCGTACAAGTGGTCAAACCGTCGGATTACGCGGCCTCGGTGACGCTGACGGGTGACATTCAGGCCCGTGTCCAGACCGAGCTGTCCTTCCGCGTCGG CGGCAAAATCATCCAGCGTACGGTGGATGTCGGTGATCGGGTGACCGCCAAGCAAGTGCTGGCGCGCCTCGATCCCAAGGACTTGCAGACCAATGTCGAT TCGGCCCAGGCCCAAGTGGCCGCCCAACAGGCGCTGGTCAAGCAGAATGCGGCGGCGTTCGTGCGCCAGCAAAAACTCCTGCCCAAGGGCTACACCAGCC AGAGCGAATATGACTCGGCGCAGGCAGCGTTGCGCAGCAGTCAGAGCGCATTGAGCGCGGCCCAGGCGCAGCTGGCCAATGCCCGCGATCAACTGAGCTA CACCGCACTGATCGCCGAAGCGCCCGGCATCATCACCGCACGTCAGGCTGAAGTCGGCCAGGTGGTGCAGGCGACAATGCCGGTTTTCAGCCTGGCTCGC GATGGCGATCGAGATGCGGTGTTCAATGTCTATGAATCGCTACTGGCCGAGAAGCCGACGGATCAAACCATTGTCCTCAGTCTGCTCGATAACCCCGAGA TCAAAACCACCGGCACCGTGCGCGAAGTGACCCCGGCGGTGTCCGCCCAGTCCGGCACCGTGCAGGTCAAGGTTGGCCTCGACAGCCTGCCCGCCGGGAT GCAATTGGGTTCGGTGGTGAGCGCCACGGCCAGAGGTTCGGGCAAGTCTGCGATTGAGTTGCCATGGTCGGCCCTGACCAAAAACATCAGTGAGCCTGCT GTCTGGTTGGTCGACGACAAAGGCCAGGCCCAATTGCACTCGGTCACCGTTTTACGCTACCTGACCGGCAGGGTCATTATCAGTAAAGGCCTCAACGAGG GCGATAAAGTCATCATCGCCGGAGGGCAGTTGTTGCACCCGGGCATGGAAGTCGAGATTGCCGAAAATACTTACAAGGATCTGAGTTGGGGAGCCAAGCC ATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGCCTTTTTGGGCATTGCCCCTTGGATTGTCCCTTGGGCTGGTGCTGAGCGCCTGTTCCAAAAACGAACCGCCACCGCAGCCGGTACGTCCCGTGCTGTC CGTCAAGGTCAAGGCCTTGAACGAAGAGGATCTGGGCCGGTTTGCCGGCAGTATCCAGGCGCGTTACGAAAGCAATACCGGTTTTCGGGTGGGCGGGCGC ATCGCCAGTCGTAACGTCGATGTCGGGGCCGAGGTCGAGAAGGGCACATTGCTCGCGACCCTTGATCCTTCTGATCAGCAAAACCAGTTGCATTCGGCTC AGGGCGACCTGGCGAAAATCTTCGCGCAATTGATCAATGCCAAAGCCAGTGCGTCGCGCCAGCAGGCCCTGTTTGATCGCGGAGTGGGTGCGCAAGCGCA GCTGGACGCCGCCCTGACCGATCTGAAAACCACTCAGGCCTCCCTCGATCAAGCTCAGGCGACGGTCAGCCAGAGCCAGGATCAACTCGGCTACACCGAG
|
|
| Amino Acid Sequence |
>RND transporter
MAVPGLKVIMALSVAMLLTACDEKKPIQEYLPRVFVQVVKPSDYAASVTLTGDIQARVQTELSFRVGGKIIQRTVDVGDRVTAKQVLARLDPKDLQTNVD SAQAQVAAQQALVKQNAAAFVRQQKLLPKGYTSQSEYDSAQAALRSSQSALSAAQAQLANARDQLSYTALIAEAPGIITARQAEVGQVVQATMPVFSLAR DGDRDAVFNVYESLLAEKPTDQTIVLSLLDNPEIKTTGTVREVTPAVSAQSGTVQVKVGLDSLPAGMQLGSVVSATARGSGKSAIELPWSALTKNISEPA VWLVDDKGQAQLHSVTVLRYLTGRVIISKGLNEGDKVIIAGGQLLHPGMEVEIAENTYKDLSWGAKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|