Pseudomonas fluorescens C1, VC33_RS17305
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C1 FCC4LTTACXX-wHAIPI007895-92_L5_1_(paired)_contig_13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTGGCCTGCGACGTCCAGCGTGAGCAAATCCGCAGCGTTTTTGGCCGGGATAACTCGTGGCACTTTCACGCCGCGGTGCTCGCGCAAATGCTTGAGCCC TGCGTGCTGGGCTTGCAGTTCCAACGCTGAATAGTCGCCACGGCAGATTTTCAGGACGAATCGCCCTTGGTCGCTGTCGACGCGGAAATTGAGATCTTGC TGACTGCCCAGGGCCTGTAGCTTCCCGCTCAGCCCATAATGCCCCTCCAGCAGCTCAAGCGCTTGCTGCGCAGACACTTGCGGGCTGGGCAAACTGGCGC GATGAATCAACGTGGCGAGCGGCATACAACGACCTCTGAAATTTTATTAGGCGCTTATATCGCCACTGCATCGATCGATAATCAACCCCCGTTGACACTG TAAATCCCAAATACGACCAACAACCCTCTTGCACCACCCTGCTCCTGCCGACAAGCTATGCTCATTCGCTTTATCGTCTTTCGGAAAAAGGCTGGCCAAC
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| DNA Sequence for Gene |
>VC33_RS17305
ATGCGTATTCTCATCACCGGCGGTGCCGGTTTCATTGGCTCTGCCCTGATTCGTCACCTGATCCGGCACACCGGGCACGAAGTGCTCAACCTGGACAAGC TGACCTACGCCGGCAATCTCGAATCCTTGACTAGCATTGCCACCGACACCCGCTATGAATTCGTGCAAGCCGATATCGTTGATCAAGCGACCGTCAGCGC GGTGCTGACGCGCTTCCAGCCGCACGCAATCATGCACCTGGCAGCCGAATCCCATGTCGACCGCTCCATCGACGGCCCCTCGGATTTCATTCAGACCAAC ATTGTCGGTACCTACAGCCTGCTGGAAGCGACCCGCGCCTACTGGCACACCTTGGCCGAGCCTGAAAAAGCCGCCTTCCGTTTCCATCACATTTCCACCG ATGAGGTGTACGGCGACCTGCACGGCGTCGATGACCTGTTCACCGAAACCACGCCTTACGCGCCGAGTTCGCCGTATTCCGCCAGTAAAGCCGCGTCCGA CCACTTGGTCCGCGCCTGGCACCGAACCTACGGCTTGCCGGTATTGCTGACCAATTGCTCGAACAATTACGGGCCATTCCACTTCCCCGAGAAGCTGATC CCGCTGGTGATTCTCAACGCCCTGGCCGGCAAGCCACTGCCTGTGTACGGCAACGGTCTGCAAGTGCGTGACTGGTTGTTTGTTGAGGATCACGCCCGCG CGCTGCTCAAAGTGGTCACCGAAGGGGTAGTCGGCGAGACGTACAACATCGGCGGTCACAACGAACAAAAGAACATCGACGTGGTGCGTGGCATCTGCGC CCTGCTCGAAGAACTGGCGCCGCAAAAGCCTGAGGGCATGGCGCACTTCGCCGATTTGATCACCTTCGTCCAGGACCGTCCCGGCCACGACCTGCGTTAC GCCATCGACGCCAGCAAGATCGAACGCGAACTGGGCTGGGTACCTGAAGAAACCTTCGAAACCGGCCTGCGCAAAACCGTTCAGTGGTATCTGGATAACC TGGAGTGGTGCCACCGTGTCCAGGACGGCAGCTATCAGGGTGAACGCCTGGGCGCCATCAATACCAAGGAGCTGCTCGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGAAAGGCATTGTGTTGGCAGGCGGCTCGGGCACGCGTCTGCACCCGATCACGCTGGGCGTGTCCAAGCAGCTGTTGCCGGTCTACGACAAACCGATGAT CTACTACCCGATCTCGGTCCTGATGCTGGCCGGCATCAAGGACATTTTGCTGATTTCCACGCCTCAGGATTTGCCGCAGTACCGCAACCTGTTGGGTGAT GGCAGTCAGTTCGGGGTGAACTTCAGTTATGCCGAACAACCGTCACCGGACGGTCTGGCGCAGGCATTTCTGATTGGTGAAGAATTCATTGGCGATGATC CGGTCTGCCTGATCCTGGGCGACAACATCTTCCATGGCCAGCACTTCGGCGATCAATTGAAAAACGCGGCAAAACGCCCCTCTGGCGCTACCGTGTTCGG CTATTGGGTCAAAGACCCGGAACGCTTTGGGGTGATTGATTTCGACATTGAAGGCCGCGCCTTGTCGATCGAAGAAAAACCGAAAAAACCAAAGTCCAGC
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| Amino Acid Sequence |
>dTDP-glucose 4,6-dehydratase
MRILITGGAGFIGSALIRHLIRHTGHEVLNLDKLTYAGNLESLTSIATDTRYEFVQADIVDQATVSAVLTRFQPHAIMHLAAESHVDRSIDGPSDFIQTN IVGTYSLLEATRAYWHTLAEPEKAAFRFHHISTDEVYGDLHGVDDLFTETTPYAPSSPYSASKAASDHLVRAWHRTYGLPVLLTNCSNNYGPFHFPEKLI PLVILNALAGKPLPVYGNGLQVRDWLFVEDHARALLKVVTEGVVGETYNIGGHNEQKNIDVVRGICALLEELAPQKPEGMAHFADLITFVQDRPGHDLRY AIDASKIERELGWVPEETFETGLRKTVQWYLDNLEWCHRVQDGSYQGERLGAINTKELLA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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