Pseudomonas fluorescens C1, VC33_RS15275
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C1 FCC4LTTACXX-wHAIPI007895-92_L5_1_(paired)_contig_12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCTTCGTGGCGATCGGTCAGCGCGCTGACCAGGTCGAGCAGGCGATCCGTATCGCTGAACACTTCGGCGGTACCGTAAGCATGCACGGCGACGTAGT TCCAGGTCGGCACGACTTTGCCGTGTTCGGCTTTGGCCGGATAAAACCCGGGGCTGACATACGCATCGGCACCGGCAAAAATCACCAGGGCTTCAGCGTC GTCCTGCAATGCCTTCCACTGTGGATTGGCCCGGGCGAAGTGGCCGTAGAGGGTGCCATTCGGACCTTCGTCAGGTTTGAACAACAGCGGCAGATGACTG GCTTGCAGGCCTTGCTCGCCGTGGGTAACCACCATGGCGAGGCGGGTGCCGAGGATCTGCTGGCGCAGTTCATCCAAATCTTTGATGGCAAAGCTGCTGG GGTTGTACATGGAAAAATTCCTTGGCGAATGTCTCCATCCTAGGCAGGCTATTGGTCTGTTGTAAGAGCCATTACCGGCCAATTTCATAGGTCCATTACC
|
|
| DNA Sequence for Gene |
>VC33_RS15275
ATGACGGACGCGCCGCTTTCCCTCTCATTCAACCCGGCAGGCATCGAACTCGATCGTCGCCAGGGCCTCAGTCGCCAGCTGTATCAGGCGTTACGGGTGC GAGTGCTCGACGGGCGACTGGCCAGCGGCACGCGACTGCCGGCCAGTCGGGATCTGGCGGCGGCGCTGGCGATTTCCCGAAACAGTGTGGTCCGCGCTTA CGATCAACTCTATGCCGAAGGCTTTATCGAAGGCCGAGTGGGCGACGGGACTTACGTCGCGCAACTGCCCCAGGCCGCGTTACCGTCGAAAAAATTATCC ACAAAAGTATCCACAGGGTTTTCAACAGGGTTACCCACAGCCTTATCCACAAATTGGCTAGATTTACCTGTGATTCCATCCAGTAAAGTTATCCACAGCG GCGCATTGGGGCGCGTTGAAAAGAACCATTTAGCCCTGCCGCCGAGTGGACCGCCGCGTGCTTTTCGGGTCGGTGTTCCGGCATTTGATCTGTTTCCTTT CGAAGTCTGGGCCAAGCTGAACGCGGCTTTCTGGCGCAAACCGGATTTACAGCAGTTGTGTTACGGCGATCCGGCGGGCGATGCGCGTTTGCGCGGTCTG ATTGCTGCGTATTTACGCAGTTCGCGGGGCATGCAGTGTTCGGCTGAGCAAATAGTGATCACCAGTGGCGCGCAACAGGGAATTAGCCTTTGTGCACAGC TGCTGGTGGAGCCGGGTGATGGGGTGGCGATCGAGAATCCGGGGTATCGGGCAGCGGGCCATGCGTTCGCCGTGGCCGGTGCGCGATTGCACGGTGTGGC GGTGGACAGCGAGGGTATCGATTGTCGCGAATTGGCAGGGCTCAAGGATTGTCGCCTCGCTTATGTCACGCCGTCGCATCAATACCCGACCGGTGTGGTG ATGAGCCTGGCACGGCGCCTGGAATTATTGGCATGGGCCGAACGCACCCAAGGCTGGATCGTCGAGGACGATTACGATGGTGAGTACCGATACAGCGGTG CGCCGCTGGCGCCGCTGGCGGCACTCGATCGGCAGGGACGGGTTTTGTACGTCGGGACGTTTGGCAAAGTCGCTTTCCCGGCACTGCGTCTGGGTTATCT GGTGTTGCCGCCGACCCTGGTGCAGGCATTCTCTCAACGGCGCGCTGTGGACGTGCGGCATTCCGAAGTGAGCACTCAAGCGGTGATGGCCGAATTCATG GCTGCCGGGCACTTTCAGCGTCATATCCGCCGCATGCGCCGTGCCGCCCTGAGCCGGCGTAATACGTTGCTGGCCGGTTGGCCGCAGAACATTCCCGGGA TTGGCAGCCTGCCGAGCGTCGCGGCAGGGCTGCATTTGACGGTGGCGGTCGACTCTCAAGCCCGGGAGCAAGAACTGGTGGAAAAAGCGGCCAGCGCCGA TGTCGAGATCAACGCATTAAGCAATTACTGGCTGCCGGATTCGCAAACACCGGTGGACCAGCGCGCAGGGCTGGTCCTGGGGTTTGCGGCAGTGCCGGAA TCGGCGATCAGCGCTGCACTCGGGCGTTTGGAAGCGATCTGGCGTCCATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAGTGCCTGGGTTCCCGGGTTTACTTGAAGAACAATGCAGCAGCCAGTCGTTGGTTGATTTCAGAGCGATAGATGGCAATGGACTGATGAGCGTTCAAC TCATCACGCTTTTCGTGCGATCCCCCTAAACCGCGTTGTTCGACGGTCTTCAAGTGCGCAGCAGAGAAGGCAGCTCGTGGGCTGTCAGACGCCGGGTAGT GAAAGTGCGCGTACCAAAGGATTTTGCGGGTTTCGTGATCGCGAATCTCATATTCGTCCAGATAGTCTTTGCGCGGTCCTTTCAAACGTTGATGTTCCGG CAGTGGTTTACCGATCCTGTGGATGGTCACCTGGCCCCTGCTGTGCAGCCATTCAACGCGGCCCGCGGTGGGCGGCTGTCGCTTGGTCATGCTGATACGG ACATCGGTGCCTTTTTTGTAAAGCGCGACCGCCTCATCGTTTAGCCTTTTGGCCACGGTGACCGCCGATCCCGGGCCGCCTTCGGTGGAGTTGCTATCGG
|
|
| Amino Acid Sequence |
>GntR family transcriptional regulator
MTDAPLSLSFNPAGIELDRRQGLSRQLYQALRVRVLDGRLASGTRLPASRDLAAALAISRNSVVRAYDQLYAEGFIEGRVGDGTYVAQLPQAALPSKKLS TKVSTGFSTGLPTALSTNWLDLPVIPSSKVIHSGALGRVEKNHLALPPSGPPRAFRVGVPAFDLFPFEVWAKLNAAFWRKPDLQQLCYGDPAGDARLRGL IAAYLRSSRGMQCSAEQIVITSGAQQGISLCAQLLVEPGDGVAIENPGYRAAGHAFAVAGARLHGVAVDSEGIDCRELAGLKDCRLAYVTPSHQYPTGVV MSLARRLELLAWAERTQGWIVEDDYDGEYRYSGAPLAPLAALDRQGRVLYVGTFGKVAFPALRLGYLVLPPTLVQAFSQRRAVDVRHSEVSTQAVMAEFM AAGHFQRHIRRMRRAALSRRNTLLAGWPQNIPGIGSLPSVAAGLHLTVAVDSQAREQELVEKAASADVEINALSNYWLPDSQTPVDQRAGLVLGFAAVPE SAISAALGRLEAIWRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|