Pseudomonas fluorescens C1, VC33_RS15050
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C1 FCC4LTTACXX-wHAIPI007895-92_L5_1_(paired)_contig_12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGCCTGCTGCCGTACCTCGGCTTGCTCAGCTTGCGGGCACACTCGGCGGCGCTGATCGAAGCGGTGTTGCGTTACTACTTCAAGCACGAAGACCTGGTC ATCGAGCAGTGCATCGAGCGTCGCGTGGAAATCCTCGACGAGCAGCGCAATCGTTTGGGCCGAGCCAACAGCCTGCTGGGCGAAGACCTGGTGCTGGGCG AGCACGTGCGCGACCGCAGCGGCAAATTCCGTATCCACATCACCCAACTCGACTGGCAGCGATTCCATGAATTCCTGCCGATCGGTTTCGGCTACCAGCC TCTGTGCGCGCTGGTGCGGTTCACCCTGCGTGACCCGCTCGACTACGACATTCGCCTGGTGTTGCGCCAGGAAGAAATCCCCGAACTGCGCATCGGTGAG CAGAACGCCTGTCGCCTGGGATGGACCAGTTGGCTGGGCCGCGAAAAAGCGGACGGCGTGGTGACCCTGGGCAGCAAAATTCATTAAGGACAGATGACCA
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| DNA Sequence for Gene |
>VC33_RS15050
ATGATCAACGTAGACCTGCAACAACTTATCCAGGCGCTGGACGCCGAAACCCGTCGTGATCTGGAAAGTTCGGCCGAGCGTTGCGTCGCTCGTGGCGGCA GCAAAATCCTCGTCGAAGACTTGCTGCTGGGCCTGCTGGAGCGCCCGCAAGGCTTGCTCGCACGCGCGCTGCAAGATGCCGAAGTGGACGCCGGTGAGCT GAGCGCCGCGTTGCAGTCGCGGGTCGAGCACAGCGCCTCGCGCAATCCGGTGTTCGCCCCGGAACTGGTGCAGTGGCTGCAAGATGCGTTGCTGGTGGCC AACCTCGAACTGGGCCAGACCCAGGTCGAACAAGCTGCCCTGATTCTCGCGCTGCTGCGCAACCCGATGCGCTACGCCGGCAGCCGCTACCAGCCATTGC TGGCAAAACTGAACATCGAGCGACTGAAAGAATTCGCCCTGTCGCAGAAAGAACAACCGGCCACCGGAAAACCCGCCGTGCCGGGTGAGTCGTTGCTGGA GCGCTTCACCCACAACCTGACCCAACAGGCCCGCGACGGCAAACTCGACCCGGTGCTGTGCCGCGATGGTGCGATCCGCCAGATGGTCGACATCCTCGCC CGCCGGCGCAAGAACAACCCGATTGTGGTCGGTGAGGCCGGTGTCGGTAAAACCGCCATCGTTGAAGGCCTGGCCTCGCGCATCGCCGCCGGTGAAGTGC CGCAAGTCTTGAAAGGTGTGGAGTTGCTGTCGCTGGACATGGGCCTGTTGCAGGCGGGCGCCAGCGTCAAAGGCGAGTTCGAACGCCGCCTCAAGGGCGT GATCGACGAAGTTAAAGCCTCGCCGAAACCGATCATCCTGTTCATCGACGAAGCGCACACGCTGATCGGCGCGGGCGGTAATGCCGGCGGTTCCGACGCG GCCAACCTGCTGAAACCGGCCCTGGCCCGTGGCGAGTTGCGAACCATCGCCGCCACCACGTGGGCCGAGTACAAAAAATACTTCGAGAAAGACCCGGCGC TGGCCCGTCGTTTCCAACCGGTGCAACTGCACGAACCGACCGTCAGCGAAGCGGTGACAATCCTGCGTGGCCTGGCTCAGGTGTACGAGAAGAGCCACGG CATCTACCTGCGCGATGACGCGGTGGTCTCCGCTGCCGAACTGTCCGCCCGTTACCTGGCGGGTCGCCAACTGCCGGACAAAGCGGTTGATGTGCTCGAC ACCGCCTGCGCCCGCGTTCGCATCAGCCTCGCCGCCGCCCCGGAAAGCCTTGAACGCCTGCGTGGCGAACTGGCCGAAGGCGGCCGTCAGCGTCAGGCCC TGCGCCGTGATGCCGAAGCCGGTTTGCTGATCGATCACGAAGCGCTGGACGCGTTGGAAGATCGCCTCGATGAAGCCGAGAGCGAAATGATCGCGCTGGA AACTCTGTGGACTGAACAGAAAGAATTGGCCGAGCGCCTGCTGGACCTGCGCCAGCAGCTGGCCAAGGCCCGTGAAGCTGCTGCCGTCGAGCCGACCGTC ACGGTTGAAGAAGACGCTGAAGGCACCGTGATCGAAACGCTGCCGGTCGACGAGGCGCAAAGCGTCGCGTCTCTGGAATCCGCACTCAACGACACGCACA AAGCCCTGACCGAACTGCAAGTCAAAGAACGACTGGTGAGCTTCGAAGTCTGCCCGCGTCTGGTCGCCGAAGTGATCAGTGCCTGGACCGGTGTGCCCCT GGCGCAACTGGCCCGTGAGCACAACGCCAAGGTCGCCAGTTTCGCCACCGACCTGCGCACGCGCATCCGGGGTCAGGAGCAAGCCGTTCATGCACTGGAC CGCTCGATGCGCGCCACGGCGGCGGGCCTGAACAAACCGGACGCGCCGGTCGGCGTGTTCCTGCTGGTTGGCCCGAGCGGCGTTGGCAAGACTGAAACCG CGCTGGCCCTCGCCGACTTGCTGTACGGCGGTGATCGTTTCATCACCACCATCAACATGTCCGAGTTCCAGGAGAAGCACACCGTCTCGCGCCTGATCGG TGCGCCACCGGGCTACGTCGGTTACGGCGAGGGCGGCATGCTCACCGAAGCCGTGCGTCAGAAGCCGTACTCCGTCGTCTTGCTCGATGAAGTCGAAAAG GCTGACCCGGACGTGCTCAATCTGTTCTATCAAATCTTCGACAAAGGCGTGGCCAACGACGGCGAAGGGCGCGAGATCGATTTCCGCAACACGCTGATCC TGATGACCTCGAACCTGGGCAGCGACCGCATCAGCGAGCTCTGCGAAAATGGCGCGCGGCCGACCGCCGAAGTGCTTGAAGAAACCATTCGCCCGGTCCT CAGCAAACACTTCAAGCCAGCGCTGTTGGCGCGCATGCGTGTAGTGCCTTACTACCCGGTCGGCGGCCCGGTGCTGCGCGAGCTGATCGAAATCAAACTC GGCCGTCTGGGCGAACGCCTGAACCGTCGTCAGCTGGATTTCACGTACTGCCAGAACCTCGTCGATCACCTGGCCGAGCGCTGCACGCAAAGCGACAGTG GCGCACGCCTGATCGACCATTTGCTCGACCTGCACGTGCTGCCGCTGGTGGCCGACCGCTTGCTCGACGCAATGGCCACCGGTGAAAGCCTCAAGCGTGT GCATGCCACGCTCGACGGTGACGCCAGCGTGATCTGCGAGTTCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTGGGTGTGATGTTCACTCAAGTGCCGCAACCGCTGGTCTATGCCGAAGCCTTGCTGGCGCAGTTCGCCAGCCTGTCGCGGGCGGCGGACGGTGCTGCG CTGCTGGGTGACTTCGTGCGCGGTCTGGCCGAGCTCAGCGGTTGCGAACTGACGCAGTTGTACTTGCTGGACGCGACCCACACTTGCCTGGGGATGAATG CCGAATGCCTGAACGGCATCCTGCAACCCCGGGAAGCGGCGAGCCTGCCGGCGGATTACAACGGCGAACAACTGCTGCAATTCGCCTTGTGCCAGAACCG CGTGGTGAGCCTCAGCGAACTTAGCGGCAGCCTGCACGAAACCAGTTTCCTGCCGCCCCAGGCCACGCCTTGGCAGTCGTTGCTATGCGTGCCGTTGGTC AATCAGCAGAAGTCGGTTGAAGGCTTGCTGCTGTGCGCCAGTCGCCGGCACATCGACCTGCAAGGTTTTGCCGATTCCCTCGGTCAGCTCGGCTCGTTCG
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| Amino Acid Sequence |
>ATPase AAA
MINVDLQQLIQALDAETRRDLESSAERCVARGGSKILVEDLLLGLLERPQGLLARALQDAEVDAGELSAALQSRVEHSASRNPVFAPELVQWLQDALLVA NLELGQTQVEQAALILALLRNPMRYAGSRYQPLLAKLNIERLKEFALSQKEQPATGKPAVPGESLLERFTHNLTQQARDGKLDPVLCRDGAIRQMVDILA RRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPQVLKGVELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSDA ANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLAQVYEKSHGIYLRDDAVVSAAELSARYLAGRQLPDKAVDVLD TACARVRISLAAAPESLERLRGELAEGGRQRQALRRDAEAGLLIDHEALDALEDRLDEAESEMIALETLWTEQKELAERLLDLRQQLAKAREAAAVEPTV TVEEDAEGTVIETLPVDEAQSVASLESALNDTHKALTELQVKERLVSFEVCPRLVAEVISAWTGVPLAQLAREHNAKVASFATDLRTRIRGQEQAVHALD RSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALALADLLYGGDRFITTINMSEFQEKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVVLLDEVEK ADPDVLNLFYQIFDKGVANDGEGREIDFRNTLILMTSNLGSDRISELCENGARPTAEVLEETIRPVLSKHFKPALLARMRVVPYYPVGGPVLRELIEIKL GRLGERLNRRQLDFTYCQNLVDHLAERCTQSDSGARLIDHLLDLHVLPLVADRLLDAMATGESLKRVHATLDGDASVICEFA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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