Pseudomonas fluorescens PICF7, PFLUOLIPICF7_RS21085
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PICF7, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGCTATGCCTTCCCCGGCAATGTCCGTGAGCTCAAATGCCTGGTGGAGCGCGCAGTACTGCTCTGCGATGACGGAGTGATCCTGCCGGTGCATCTTTC CTTGCCTGCACCACCTGCCAATACCTCTGTCGATGCGACGTTACGCCAACGCTTGGAGCGGGTAGAGCGGGTGTTCCTGATCGATTGCTTGCACAAGAAC CGTGGTAATCGCACCCGAACTGCGCGTGAGCTGGGCGTCGCCCGCCGCACGCTGCTCTATCGCCTGGCGCGTCTGAAAATCCCCGTTGGCGATGTCCGTG AGGAGTGCTGAGTGGGGACGTGCTGGCACCTGGTTTTCATGGGAGATACCTGATGTTTTTTCATCCATGGCAAGCCCTGTTGCTTGCGCTGTGTTTGTTG AGTGGCTGTAACGCCAATTATGTCTTTGACGATGCCGACTACCGCCCCTTGGGTGATCCCCAGGCGGTCCGTCGTGGGCAGTGAGCAGGAGAGTTCTGCC
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| DNA Sequence for Gene |
>PFLUOLIPICF7_RS21085
ATGCAATTAGTGTTTGAAGTCTGCAGTGTCGTGAACGGTGAACCGTTGGCCCGCAAGACGTTTGAGGGGGTTGGCGGTGTGATCGGCCGTGGGGTGGGGT GTGACTGGATCATCCCCGATGCCCATCGCCTGATCTCCAGTCATCATGCCCTGGTCAGTTATCGAGAAGGTCACTACTTCCTGACGGATATCAGCAGCAA TGGCATCACGGTGTCAGGCAGCATGGAACGCCTGGACAAGGGGCAAGCGCGGCTGATCACAGATGGGGAAGTGTACCAACTGGGCCAATTGGAAATTCGT GCTCGCCTGGTGGCCAATGAACGGCGGCCCTTTGCTCGGAATGACTTGATTCCAGACGACGCATTCCTCGGGCTTGACCCTCTTCATGCACTGGATCGCG AGCAATTGTGCGTCGACTCATCGGCAGAATTGGATGCTCTGGATGCGTCAACGCAGGTGTCTCCCCAATCCCACATGCAAGGGCCTGTGGATCGCGATCA TCTGATCGTACCGACATGGGCCGCACCCGACAGGCAAGTGAACCCTCCCGAACCCGTCATCGCCGTGCCTGCTGCCTCGCAAGCGTTCTGGCCGCAGTTC GCGCAAGCATTGGGCCTGCCATTGGACACGCTTGATACGCCAGGTCGCGAAGCCCTTGCGATCAAGGTGGCAGGGCTGTTCAGGCACGCCATCGAAGGGC TGCAGCAAAGCCTGCGAACGCGCGATGAGCTCAACAGCGAGATCAACGTTGCGTTGGTCTCCCCAGTGCTGAACATTCGCAACCCGTTGAAAGTCTGCGC CGACAGCCAGGCTGCCATGGCGTCGTTGTTGGGCACTGGTGAGTCGGGTGAACTCGCTGCCGAGCAAGCCGTCGCCGAGGCCTGTCGAGACCTGCAAGTT CATCAGCTGGCGATGGTCGTGGCCTGCCGGGCCGCGGTACGGGGTGCACTGGCAGCCTTTGCGCCTGGGCAGTTGTTGCCGTGTTTCGAGCGCGAGGGCA AGCGCCCCAGGTTTTTCACCGAGGCGGCCCATTGGCGGAGTTACCAACGCCACTATCGACGACTGGTTGACGAAAACTCCTTGGGTGATCAGTTGCTGCG CAATGACTTTTCCAATGCCTACGGGGAGCAGGTACGCCTGGTTTCCACCCTGAATGTAGGGTGCCCAGGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGTTCAGGTACCGAATTACTGCCCTGTCACGGGTGTCAGCACTGTGCCTGTTGGCCGGATGTAGCAGCCTTTCACCTTTTTCGACCCTGACCAAACTCGA CCTGACGTTGATCGCAGGTGATGAAGTCAACCCCGACCTTCACGGTCGCCCGTCACCCGTGGTGGTGCAACTGCTTGAACTGCGGCACCCCGTGGCCTTT GAAAACGCCGATTTTTTCAGCCTGTACGACCGCGCCGAGCAGACGCTCTCCAAGGATTGGGTCAGCGGCGAGGAATTGGAATTGCGTCCTGGTGAACAGC AGGCACTCAAGCTCAGTGTCGAGCCGCATAGCCGCTACGTCGGCGTGCTGGCGGCCTATCGCGACTTGCCTCATGTGCAATGGCGGCTGGTGCTGCCGGT GGCGCCGGGGCAATTGACGCGTGCCGACATTGTGCTGGACCAGACGGGCCTGCGGATGGCAGCCCCTCAGACTGACAGGGCGGAGAATTGAGATGCTGGT
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| Amino Acid Sequence |
>type VI secretion protein
MQLVFEVCSVVNGEPLARKTFEGVGGVIGRGVGCDWIIPDAHRLISSHHALVSYREGHYFLTDISSNGITVSGSMERLDKGQARLITDGEVYQLGQLEIR ARLVANERRPFARNDLIPDDAFLGLDPLHALDREQLCVDSSAELDALDASTQVSPQSHMQGPVDRDHLIVPTWAAPDRQVNPPEPVIAVPAASQAFWPQF AQALGLPLDTLDTPGREALAIKVAGLFRHAIEGLQQSLRTRDELNSEINVALVSPVLNIRNPLKVCADSQAAMASLLGTGESGELAAEQAVAEACRDLQV HQLAMVVACRAAVRGALAAFAPGQLLPCFEREGKRPRFFTEAAHWRSYQRHYRRLVDENSLGDQLLRNDFSNAYGEQVRLVSTLNVGCPG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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