Pseudomonas fluorescens PICF7, PFLUOLIPICF7_RS18085
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PICF7, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTCGACCCGACACACGCCAACTGCCTGGCGCCAGGCAAAAAAACCTTCCACACCATCATCCCCGGCTTCCTCACCCAAGACGGCCAGGCCCTCGGCCC GTTCGGCGTGATGGGCGGCTACATGCAGCCCCAGGGCCACGTGCAGATGGTGATGAACCTGGTGGATTTCGGCCTCAACCCGCAAGCGGCATTGGACGCG CCGCGCTGGCAATGGCTGGGCGACATGAAGGTCGGTATCGAACAGGGTGCCTCCCGCGACTTGGCCAATGCCTTGGCGCGGCGCGGGCATCAGGTGCAGA TGGCCAGCGACCTCACCGACTACGGGCGTGGGCAGATCATTCTGCGGGACCCGGTCAGTGGTGTATTGTGCGGCGGAACGGAGCCGAGGGCGGATTCAAC GATCGCAGTGTGGTAAGCGAAAAAATTGGCTGAAGCCTGTCCCCTTTTTTCATCTCGCCTGTCATTCCAGGCAAGTGAACAATATTGAGAGCTTCCGCCA
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| DNA Sequence for Gene |
>PFLUOLIPICF7_RS18085
ATGCCTGTAGTCCGCCCCTTGCTGAAACTCAGCCTGCTGCTGAGCCTCAGCGCCAGCCCGTTCTTCGCTGCTGTCAGCTACGCCGAAGACACCGCCACTC GCCGCAGCTATCAGGTGCCCGCCGGCAGCCTGAGTGCGGCGCTCACCCGCTTTGCCGGGTTGGCGGGCGTCAATCTGTCGGTGGACCCGGCGTTGGTCAG TGGGCGCAGCAGCAGCGGTTTGTCCGGCGAGTATGCGGTCGAGGAGGGCTTTGCCCGCTTGCTGCAAGGCTCTGGCCTGCAACTGCAGCCGATGGGTGCA CAGGCCTATATGCTGGTGCCGGCGCCGGAGGGCAGCAGCCTGGAATTGGCCCCGACGTCGATCCTCGGCACCACCGGCCTGTATGACGGCGACACCTACG CCGGTGGCCAAGTGGCGCGCCGCACGGCCCAGGGCCTGCTCGGCACGCGGGACTTCATGGAAACCCCGTTCAGCATCACCACCTACACCGCTGACACGGT GAAGAACCAACAGGCCCGCACCCTGGGCGACCTGATCGCCGCCGACCCGTCGGTACGCGCGACCAACCCGGCCGGTGGGCGCTACGAGCAATTCACCATT CGCGGCTTCAGCCTGTTCAACAGCGACGTGGCGTACAACGGCTTATACGGCGTGCTGCCGACTTACACCATCGACATGGAAATGGCCGACCGCGTCGACA TCCTCAAGGGGCCAAGCCAGTTGATCAACGGCATTTCGCCGCGTGGCAGCGTGGGCGGCGGGATCAACGTGGTGCCCAAGCGCGCCACCGACAAGGACAT CAACTCGTTTACCGGCAACTGGGCTTCCGACAGCCAGGCCGGCGGCGCAGTGGACATCGGTCGACGCTTTGGCGAAGACAACCAGTTCGGCATTCGCTTC AACGGCGTGAAGCAGTCCGGCGATACCGAGTGGGATCACCAGAGCGTCGACCGCGAAATGGCCGTGCTGGGCCTGGATTTTCGTGGCGAACGCTTGCGCC TTTCCACTGACATCGGCCACACCGAGCGCGACACCGATGCGCCGCAAGAGCGCGTACAGGTGGCGGCCGCAGCGCCGGTGCCCAGCGCCAATGACGTGCG CCGCAACTATGCGCAATCCTGGAGCAAGGCCCGCACCAACGACACCTTCGGCACGGTCAATGCCGAGTATGACCTCAGCGACAACGTGATGCTCTACGGC GGCATGGGGGCGCGTAAAAGCAACCACGATTTCCTGCGCCACGCGGTGTCCGTATCCAACGCAGCCGGTGATTTCAGCGTGCAGCCACGGGATTTCACCC GCGATGAAAACGTGCGCACCTACACCGCCGGCGTGCGCAACTGGTTCCAGACCGGGCCGGTGAGCCATGAGGTCAACCTGGCCGCCAGCTACTTCGACAT GGACTTCACCAACGGAGGCGCGCGTTATACGTCGCCGTCGAGCAATCTCTACAACCCGGTGCAAACCCCCACGCCTTCGCGGCCGACGCGGTTTGATCCC AAGGTCTACACCGAAAACAAATTCAGCGGCGTGGCCTTGTCCGACACCCTGGGCTTCTTCGATGATCGCCTGTTGCTCACCCTCGGTGCGCGCTGGCAGC GCGTGAAGGTCGATGACTGGAGCGACGGCATCAAAGGTGATACCGCCTACGACGAAGAAAAGGTCTCGCCATCCGGCGGCATCCTGTTCAAGGCCACCGA CAGGTTGTCGCTGTACGCCAACTACATGGAAGGCCTGAGCCAGGGCAAGATCGCACCGTCCACCTCGATCAACGAAGACCAGATCTTCCCGCCGTTCATC AGCCGCCAGGTCGAAGTGGGCGCCAAGTACGACGCCGGGGCGTTTGCCGTGACCGCTGCGGTGTTCCGTATCAAGCAGCCGGCCTATGAAACCAATGCGA CCACGCGGCTGTTTGGTCCCAATGGCAAACGCGAGAACTCAGGTGTGGAACTGAGTGTGTTCGGCGAACCGCTCAAGGGCTTCCGCCTGCTCGGTGGTGT GATGTACATCGACAGTGAGCTGAAGGACACCACCAACGGTACCTGGGACGGCAACCGTGCCCCGGCCACGCCCAAGTACAACGTCAACCTGGGTGCCGAA TGGGATGTGCCGGGCCTCGAAGGCCTGACGCTGACCAGCCGTGGCATTTACTCCAGCTCGCAGTACCTGGACCAGTCCAACGTCAAGGAAATCGACGCCT GGAACCGCCTCGACGTAGGGGCGCGCTACGCGTTCAAGGTGGACGACAAACACATCACCTTGCGGGCGAATGTGGAGAACGTCGCCGATAAGCGCTATTG GAGTTCGGCCGGGGCTTCGGATGACAGTGAGCCGGGGCTGACCTTGTCGACGCCGCGTACCTATCTGCTGTCCGCCACCGTCGACTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGGGGACACCGATCAACCTGTGGGCGCTGGTTTGCTTGCGATAGGGAGGGGCGCCAGTCACAGCGCTATTTGCTGATGTAGCGTCATCGCAGGCAAGCC AGCTCCCACACCTGATTTTGGCGTTAATGAGAATGTTTTTTGATCACGCCGCGTCGATATGGAATAGTACCCGCCGTTTTCCCCGGCCTGTCTAGCGGGG TGTTTTAACGCCGAGGTCCTTGTCATGCGAATGCTGCGCTCCATCCCCACCCTTGCCGCCTGCGTGTTGGCGTTCTCTTCAAGCCTGCTGAGCGCCGCCC CCATCGACCTCAACGACGGCCAGCACGCGGTGCATCTGCCGGATGCGCCCAAGCGCGTGGTGGTGCTGGAATTCTCCTTTCTCGACAGCCTGGCTGCCGT TGACGTCACGCCCGTTGGGGCCGCCGATGATGGTGATGCCAACCGCGTACTGCCCCGTGTGCGCCAGGCCATCGGCCAATGGAAGTCGGTGGGCCTGCGC
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| Amino Acid Sequence |
>TonB-dependent receptor
MPVVRPLLKLSLLLSLSASPFFAAVSYAEDTATRRSYQVPAGSLSAALTRFAGLAGVNLSVDPALVSGRSSSGLSGEYAVEEGFARLLQGSGLQLQPMGA QAYMLVPAPEGSSLELAPTSILGTTGLYDGDTYAGGQVARRTAQGLLGTRDFMETPFSITTYTADTVKNQQARTLGDLIAADPSVRATNPAGGRYEQFTI RGFSLFNSDVAYNGLYGVLPTYTIDMEMADRVDILKGPSQLINGISPRGSVGGGINVVPKRATDKDINSFTGNWASDSQAGGAVDIGRRFGEDNQFGIRF NGVKQSGDTEWDHQSVDREMAVLGLDFRGERLRLSTDIGHTERDTDAPQERVQVAAAAPVPSANDVRRNYAQSWSKARTNDTFGTVNAEYDLSDNVMLYG GMGARKSNHDFLRHAVSVSNAAGDFSVQPRDFTRDENVRTYTAGVRNWFQTGPVSHEVNLAASYFDMDFTNGGARYTSPSSNLYNPVQTPTPSRPTRFDP KVYTENKFSGVALSDTLGFFDDRLLLTLGARWQRVKVDDWSDGIKGDTAYDEEKVSPSGGILFKATDRLSLYANYMEGLSQGKIAPSTSINEDQIFPPFI SRQVEVGAKYDAGAFAVTAAVFRIKQPAYETNATTRLFGPNGKRENSGVELSVFGEPLKGFRLLGGVMYIDSELKDTTNGTWDGNRAPATPKYNVNLGAE WDVPGLEGLTLTSRGIYSSSQYLDQSNVKEIDAWNRLDVGARYAFKVDDKHITLRANVENVADKRYWSSAGASDDSEPGLTLSTPRTYLLSATVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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