Pseudomonas fluorescens PICF7, PFLUOLIPICF7_RS11610
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PICF7, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCAATGGCCTGGAAGTCGGTTTGCCGCCTTTGCGCGAGCGCAGTGATAAAGCCCAGTTGCTGGATTTCCTGCTGACCCAGGAGGCCAATGGTGAGCCGGT TGCCCTCGACCCGTCGGCGCGGGGAGCGTTGTTGGCGTTTGCCTGGCCGGGGAACGTCCGCCAGCTGCGCACGGTGCTGCGCACCTTGGTGGCGCTGTGT GATGAGGGGCGTGTTGGCCTGGAAGATTTGCCTGCGCAGATTCGTCAGGTCAGGCCCGTGGCAGTCGCGCAGACCAAACCGCTGGAGTCGCCGCTGGAAG ACGCCGAGCGCCTGGCGTTGCTCACGGCGTTGCAGCAGCAGCGCTGGCACATGACGCACACGGCGGAGCAACTGGGCGTCAGCCGCAACACGCTGTATAG AAAGCTGCGCCGGCATGGCATCGCGCGTCACGCCCTCAGCTAAAGGGTGCGATTTTCGCCCCCCTGCGCTAACCTGCCTCGATGTTTTACGAGGTCGACT
|
|
| DNA Sequence for Gene |
>PFLUOLIPICF7_RS11610
ATGCACATTCATATTCTCGGTATTTGCGGCACATTCATGGGCTCGATGGCAGTACTGGCCAAAGAGCTGGGCCATCACGTGACAGGCTCCGACGCCAACG TCTATCCGCCCATGAGCACGCAACTCGAGGCCCAGGGTATCGAGTTGACCCAAGGTTACGACCCGTCGCAATTCGACCCGGTCCCGGACCTGGTGGTGAT CGGCAATGCCATGTCCCGTGGCAACCCGGCAGTCGAATACGTACTCAATAAAGGTTTGCCTTATGTGTCCGGCCCGCAATGGCTGGCCGACCATGTGTTG CAAGGCCGTTGGGTACTCGCGGTCGCTGGCACCCACGGCAAAACCACCACCAGCAGCATGCTCGCCTGGGTGCTGGAGCATGCAGGCATGAGCCCGGGCT TCCTGATCGGTGGTGTGCCGCAGAATTTCTCGGTGTCGGCGCGCCTGGGCGATACGCCGTTCTTCGTGATCGAGGCGGATGAATACGACAGCGCCTTCTT CGACAAGCGCTCCAAATTCGTTCACTACCGCCCGCGCACGGCAATCCTGAACAACCTGGAGTTCGACCACGCCGACATCTTCCCCGATCTGGCGGCCATC GAGCGTCAGTTCCATCACCTGGTGCGCACCATTCCGAGCGAAGGCCTGGTGATCCACCCGACCACCGAGCCGGCCTTGCAGCGTGTGATCGAGATGGGCT GCTGGACCCCGGTGCAAACCACTGGCGAGGGCGGGCAGTGGCAGGTCAAGCTGCTCAGCGACGACGGTTCCACATTTGAAGTGCTGTTCGAAGGCCAGAC CCAAGGCATCGTCGAGTGGGACATGACCGGCCAGCACAACGTCGCCAATGCCTTGGTCACCCTGGCGGCTGCGCGGCACGTGGGCGTGGTGCCTTCCATG GGCATTGCCGCGTTGAGCGCGTTCAAAAGCGTGAAGCGCCGTATGGAAAAAGTTGCCGACGTGAATGGCGTTACCATCTACGACGACTTTGCCCACCACC CGACGGCAATTGCTACTACGTTGGATGGCCTGCGCAAACGTGTCGGCGATGCGCCGATCATTGCGATTGTCGAGCCGCGCTCCAACTCCATGAAGCTCGG TGCCCACCGGGATGGCCTGCCGGAAAGCGTCAACGACGCCGACCAGGTGGTCTGGTACGCACCGGCCAACCTCGGCTGGGATCTGCCGGCGATTGCAGCC CTGTGCACCGTGCCTTCCCTGGTCTGCGACTCCATCGAAGGCATCATCGAACACGTCAAGCGCCTGGCCAAACCGGGCACCCATGTCGTGGTCATGAGCA ACGGCGGCTTTGGCGGCCTGCACGGCAAATTGGCTGAGGCGCTGAAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTGGCCCGGAACGCGTTACCCTGGCGATGACCGGCGCTTCTGGTGCGCCTTATGGTTTGCGCCTGCTGGATTGCCTGGTACGCGAAGAGCGCGAGGTGCA CTTCCTGATCTCCAAGGCCGCGCAGTTGGTGATGGCCACCGAGACCGACGTGGCGCTGCCGCCCAAGGTGCAGATGATGCAGGCCTTCCTCACCGAATAC ACCGGTGCGGCGGCGGGGCAGATCAAGGTCTACGGTAAAGAGGATTGGATGTCGCCCGTGGCTTCCGGCTCCGGCGCGCCGGCGGCGATGGTGGTGGTGC CATGTTCCACCGGGACCTTGTCGGCGATTGCTACCGGTGCCTGCAACAACCTGATCGAGCGCGCGGCGGATGTGACCTTGAAGGAGCGTCGCCAGTTGAT CCTGGTGCCCCGTGAAGCGCCGTATTCGAGCATTCACCTGGAACACATGCTCAAGCTGTCGAACATGGGCGTCACCATTTTGCCGGCCTCGCCGGGCTTC
|
|
| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLEAQGIELTQGYDPSQFDPVPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGDTPFFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVIEMGCWTPVQTTGEGGQWQVKLLSDDGSTFEVLFEGQTQGIVEWDMTGQHNVANALVTLAAARHVGVVPSM GIAALSAFKSVKRRMEKVADVNGVTIYDDFAHHPTAIATTLDGLRKRVGDAPIIAIVEPRSNSMKLGAHRDGLPESVNDADQVVWYAPANLGWDLPAIAA LCTVPSLVCDSIEGIIEHVKRLAKPGTHVVVMSNGGFGGLHGKLAEALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|