Pseudomonas fluorescens PICF7, PFLUOLIPICF7_RS08910
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PICF7, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTCGGTTGATTGGCTCTTCCCAAAACCGCTGCAAGGGCTTTACATTGGCACTTGTAGCGGTTTTGCGAGGGCCTGCGAGAAATCAGCGCTTCCCTAAACG CTGGTGATTTTTTAAACTGTTCAGTCCGCTCGCCCAACCGGGCAGCGCGCATCTTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACTGGCGGCAAAGAGCCCCTGGTCCAGTGGG AAAACGACAAGCCTACTGTTGTAGCCCTGCGTGAAATCGCTGAAGGCCTGATGAGCTACGAGTTCATCGCCAACGCTGAAATCGTTGAAGACGAACCGCT GTTTGCAGCGTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGGTCACAGCCAACGGCAGGAGTTCACACT
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| DNA Sequence for Gene |
>PFLUOLIPICF7_RS08910
TTGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGGCCTACCTCGGCCCAGACCAGGTCAACCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ACGACGGTCAGCGCCGCCGCAGTGGCGAGGCGTATGTCACCCATCCTCTTGCGGTGGCAAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCTGCGATGCTGCATGACGTGATCGAAGACACCGGTATTGCCAAGGAAGCGCTCAGCGCGCAATTTGGCGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAAACCAAAGCCGAAGCCCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCGATATCCGGGTGATCC TGGTCAAGTTGGCCGACCGGCTGCACAACATGCGCACGCTGGAAGTGCTGTCCGGCGAAAAACGCCGGCGCATCGCCAAAGAAACCCTGGAAATCTACGC CCCCATCGCCAACCGGCTGGGCATGCACGCCATTCGTATCGAATTCGAAGACCTCGGTTTCAAGGCCATGCACCCGATGCGTTCGGCGCGCATCTACCAG GCGGTCAAGCGCGCGCGTGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAGTCGCTGAGCCACTGCCTGGCGATCGACGAGATCGAGGGCGAGGTCA GCGGGCGGCAGAAGCATATCTACGGCATCTATAAAAAGATGCGCGGCAAGCGCCGGGCCTTCAACGAGATCATGGACGTGTATGCGTTCCGGATCATCGT TGACAAGGTGGACACCTGTTATCGCGTGCTGGGCGCTGTACATAATTTGTACAAACCTTTGCCAGGCCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTACCAGTCGCTGCACACCACGTTGTTCGGCATGCATGGGGTGCCGATCGAGATCCAGATCCGCACCCGCGAAATGGAAGAGATGGCCAACAACG GCATTGCTGCCCATTGGCTCTACAAATCCAGCGGCGACGAGCAGCCCAAAGGCACCCATGCCCGCGCCCGCCAGTGGGTCAAGGGCGTGCTGGAAATGCA GCAACGGGCCGGCAACTCCCTGGAATTCATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTATTCACACCCAAAGGCCGGATCATGGAG CTGCCCAAAGGCTCCACGGCGGTCGACTTTGCCTACGCCGTGCACACCGATGTGGGTAACAGCTGCATCGCCTGTCGGATCAATCGTCGTCTCGCGCCGC TGTCCGAACCGCTGCAGAGTGGCTCCACGGTCGAGATCGTCAGCGCTCCGGGCGCACGCCCGAACCCGGCCTGGCTGAACTTCGTGGTCACCGGCAAGGC CCGCACGCACATCCGTCACGCGCTCAAATTGCAACGCCGCTCCGAGTCCATCAGCCTGGGCGAACGCCTGCTGAACAAAGTCCTCAACGGTTTCGACAGC GCCTTGGACAAGATTCCTACAGAGCGCGTGCAAGCGATGCTCCACGAGTACCGCCAGGAAACCATCGAAGACCTGCTGGAAGATATTGGCCTGGGCAACC GCATGGCCTATGTAGTCGCCCGCCGCCTGCTCGGCGAAGGCGAACAGCTGCCCAGCCCCGAAGGTCCGCTGGCGATTCGTGGTACCGAGGGCCTGGTGCT CAGCTACGCCAAATGCTGCACACCGATCCCCGGCGACCCGATTGTCGGCCACTTGTCGGCCGGTAAAGGCATGGTGGTGCACCTGGACAACTGCCGCAAC ATCACCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTCTCATGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAGCTGCGGGTGGAGCTGGAAC ACCAGCGCGGCCTGATCGCCCTGCTCGCCAGCAGCGTCAACGCGGCCGACGGCAACATCGAGAAGATCAGCATGGACGAACGCGATGGCCGCATCAGCGT GGTCCAGCTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCCCGTGTGATCAAGAAACTGCGCGCCTTGACCGGGGTCATCCGCATCACCCGTATGCGT GCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCTCTACTACAAGGAGTCATTCATGACCAAGACTGTTATCACCAGTGACAAGGCCCCAGCCGCGATCGGCACCTACTCCCAGGCGATCAAGGCGGGCA ACACCGTCTACATGTCCGGCCAGATCCCGCTGGACCCAAAGACCATGGAACTGGTGGAAGGCTTCGAAGCACAGACCGTACAGGTCTTCGAAAACCTCAA GTCGGTCGCCGAGGCTGCCGGCGGCTCGTTCAAAGACATCGTCAAGCTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCATG GGCAAGTACTTCGAACAGCCGTACCCAGCCCGCGCCGCCATCGGCGTTGCCGCCCTGCCAAAGGGTGCGCAGGTTGAGATGGACGCGATTCTGGTCATCG AGTAAAACACCCGGCGCAGCCCCCAAAGGCTGCGCCGATTTCGTTTCAGAAGGATTTCATGATGCGCAAAGCGCTTGTAGCCTCATCACTGCTCGCCCTG
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSAYLGPDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAIDEIEGEVSGRQKHIYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS ALDKIPTERVQAMLHEYRQETIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ITEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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