Pseudomonas fluorescens PICF7, PFLUOLIPICF7_RS06175
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PICF7, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGGACGGCATCAAACCACTGGCAATCGTCGCGAACGCCGCACAGAACAACGCGGCGACCATCACCGGTTTACGTCCCAGGGTGTCGGAAATCGGCCCGGT AATCAGCAGGCCCAGCGCGAGCATCGCGGTGGACACGGACAGGATCAGACTACTCTGCGCGGCATTGATGGAAAACTCGTGGGACAGCGCCGGCATCATC GGCTGCACGCAATACAGCAGGGCAAAGGTGGCGAACCCCCCGGAGAACAGCGCCAGCACCGTGCGCATGAACATCGGCGTGCCTTTTTCGATGTACGCGT CATTGAGCTGGGCCACTACCTCATCGAGGGCAGTGGGCGGGACTTCTTGAGCAAGTGGAGCGACAGCAGAATTCACGGGGACCTCGGGGAGGAAGAGCGT GCCAGGACCGGCCATGCAAAAAAGAATATAGCTGGCTAATGATTCTTTCCAATATATTGTTCGACCTGTTTGATAGTTTTTACGACCTAATGAGGTTTGC
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| DNA Sequence for Gene |
>PFLUOLIPICF7_RS06175
ATGGAATTGCGTCACTTGCGGTACTTCATTGCCGTCGCCGAAGAACTGCACTTTGGCCGGGCTGCGCAGGTGCTAGGCATCTCGCAGCCGCCGCTGAGTC AGCAGATACAGGCGCTGGAGCAGGAGGTGGGCGCGCGGTTGTTCGAGCGTACCAATCGTCGGGTCGAGCTGAGCGAGGCGGGGCGTTTGTTCCTGCACGA GGCGCGGTTGGTGCTGGCGCAGGTGGACAAGGCGGCGGATGTAGCGCGCCGGGCGCAGTTGGGTGAGCTGGGTGAATTGAAGATCGGCTTCACGTCATCG GCACCGTTTAACTCCAGCATTCCCCAGGCGATCTTTGCATTTCGCCAGGCGTTCCCGGCGGTGCATCTCAATCTGCAAGAGATGAGCAGCACCGAGGTGG CGGAGTCGCTGGTGGACGAGTCGATTCAGGTGGGCTTGATGCGCCCCCTGCCGTTGCCGGACTCACTGAGTGTGGTCGAGTTGATGCGCGAACCGCTGGT GGCCGTCATGAACGCTGGCCACCCGTTGGTAGCAGGCAGTGAGCGTGGTCTGCACTTGGCGCAGCTGGCGGAAGAGCCATTCGTGTTTTTCCCGCGCAGC TACGGCAGTGGACTCTACGCGCAGTTGCTCAGCCTGTGCCGAGACGCCGGTTTCAGCCCGCATTTTGCCCAGGAAGCGGGGGAGGCGATGACCATCATCG GTCTGGTCGCGGCGGGGTTGGGCGTGTCGGTGCTGCCCGCGTCTTACCAGCGCATACGGATTGACGGAGTGGTGTATCGCACCTTGCTGGACCCTGAGGC AGTGACATCAGTATGGCTGGTGCAGCGAAAAGGCGCGCAGACGCCGATGGCTGCGGCGTTTGTGGAGTTGTTAACGCGTAAATCCGCTCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAACGTGTACTTCAACGCGAAGCAGATCGAATGGAAGCTGTCGAGCTTTAGCGAGGCTGCGAAAGGATCACCGCGCCGTATCTGCAAGACCGCAGCGCCT GCATCGCAGCCTCGCTAAAGCTCGACAGCTCCCACCTTTGTTCGTCGCAGTTTTCCAGCTGTGGTTGCTTCAGGCATATGCCCGAGTTCCCGAAAGGCGC CCTTTGTCGTTTCTGAGGGCGCGACTACCTCAGTTCTGTTTGGTACTGCCCGTCTGCTCAAACAACTGCGCCGCCGACCCTGCCTCACCACTCACGCCAT TGCTGCGCAACCCCGCCATGATGTCGCTGTCCAGGTTGTTCACCCAACGGTTGTAGTTGCGATGGATCTTGCCGTCCTTGTAGCCGAGGTCGCGGCTGTC ACGGTAGGTGATCGCGTAGCTGTTGCGGGTGTAGCGAATGTCGATGGCCGCGTAATACTGGTTGCGCACCGTGATCTCGGCCTGCACCAGTTGTGGGCTC
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MELRHLRYFIAVAEELHFGRAAQVLGISQPPLSQQIQALEQEVGARLFERTNRRVELSEAGRLFLHEARLVLAQVDKAADVARRAQLGELGELKIGFTSS APFNSSIPQAIFAFRQAFPAVHLNLQEMSSTEVAESLVDESIQVGLMRPLPLPDSLSVVELMREPLVAVMNAGHPLVAGSERGLHLAQLAEEPFVFFPRS YGSGLYAQLLSLCRDAGFSPHFAQEAGEAMTIIGLVAAGLGVSVLPASYQRIRIDGVVYRTLLDPEAVTSVWLVQRKGAQTPMAAAFVELLTRKSAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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