Pseudomonas fluorescens PICF7, PFLUOLIPICF7_RS05105
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PICF7, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGGCAGCGACACGATCTCCATCGAATACAAGGAGTTCGGCATTCGCCTGACGCTGACGCCGACAGTGATTGACCGCAACCGCATCTCCCTCAAGGTCG CACCCGAAGTCAGCGAGCTGGACTACAGCAACGCCGTGCAGATCCAAGGCATCCAGGTGCCGGCCCTGACGGTGCGCCGTACCGACACCAGCGTGTCCCT GGCCGATGGTGAAAGCTTTGTGATCAGCGGCCTGATCAGCAGCAACAACCGCTCCACCATCAACAAGTTTCCAGGGCTGGGCGATATCCCGATCCTCGGG GCGTTTTTCCGCGACTCCAATATCAGCCGCGAAGAAAAAGAGCTGTTGATGATCGTCACACCGCACCTGGTACAGCCATTGGCCGCCAACGCCCAACTGC CGTCCTTGCCCGGCGAAAAATTGCGCAGCTACGACCCGAACTGGTACCGGTTGTTTTTCCTGGAAAACGGCAATTTCGACCGCCGTAGTGGACTTTCCCA
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| DNA Sequence for Gene |
>PFLUOLIPICF7_RS05105
ATGAGCGATAGCCTGAGCCAGACCTTTCTCGCCATCACCCGCAACACCACTGACCTGGAGTGGCTGGAGGGGGGCCCGGCGCCCCTTGGCCAGGTCGTGA GCGCCGGTACCGGCAGCCTGGACGAATTGCTCGCGCTGGTCGACGTCACCTTCGCCAACCTGGTATTCGTGGGCCTGGACCGTGAGAACCTCGTGGCCCA GAGCGCACTGATCGAAGGTGCCCTGGAGGCCAAGCCGATGCTCGCCGTGGTTGCCCTGGGCGATGGCATGGATAACCAGCTGGTCCTGAACGCCATGCGC GCCGGCGCCCGCGACTTCGTGGCCTACGGCTCACGTTCAAGCGAAGTGGCCGGCCTGGTGCGACGCCTAAGCAAGCGCTTGCCAGCCGTCGCCCACAGCG CGCAACTGGGCGGCCTGACCGTGCTGTTTGGCACCCAGAGCAATGCCGACGGAGCGATGCTGGCGACGCACCTGGCCTTGGTGGTGCAGAAAAGCGGGCA GCAAACGTTGCTGCTCGACCTGGGCCTGCCACGCAGTGACAGCCTGGCGCTGCTCGGCCTGGAAAGCACGTTCAATTTCGGCGACGCGCTGAGGCATTTG CGCCGCCTCGATTCCACCTTGATCAACAGCGCCTTCACCACAGCGCTGGACGGCTTGCGCATCCTGGCGTACGCCACCGGTGATGAACCGCTCAAACTGA CCAGCGCCGCCGAATTGTTCATGCTGCTCAGCGCACTGCGCCAACATTTCCAGCATATCGTCGTGAACATTACCGGGCAGCCCGACAGCGAAGCGTTGCG CACCTTTGTCAGCCACTGCGACAAACTGCTGTGGTGCACCGACCAGAGCGTACTGGACTGCCGGCGCAACCTCGCAGTGCTCAATCGCTGGCGCGAAAAA GGCATGAAGCTTGATCATGCCAAACTGGTAGTAGACCGCTACATCAAAGCCTGCGCACCGGACATCGAAGCCCTGGAAAAAAGCTTCGGTCTTGCGTGCA TCGCCGTACTGCCCCTGAGCGCGGAATTGCGCCTTAATGTGAAAAACCAGGGCCAGCCCCTGTTTGCCCTGGCCCCACGCGAACCCTTGACCCAAGCCGT GCGCACGTTGGGTGAGCTCCTGGCTAAACGTTCTGAGGGGCTTGCAAAACCGTCAATGCGTTGGTTTGAACGCCTCCTGGGATCAGGACAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGGCGAAAAATTATTTGGCGGCCCCGCCCGCAGCACAAGCGGCAGCACCGATAACGACGGCCTCAAACTGGTGTTGCATCGCTACATCATTGACGCCAT CGAGGAGTCGGGCAAGAACCTGCTCGAAGGCACTCGCCAATCCCTGGCGCAATTTGTCATCGACAAGGTCTCCGAGTACATCACACGCATGCGCCTGGCG ATTTCGCGCTATGAGATGGAACGCCTGGCCGAAGAAATCGTCGATGAACTCACCGGTTTCGGCCCGCTTGAGGTGTTGCTGCGTGACCCGTCGGTGACCG AGATCCTGGTCAACGGCCCACACCGGGTGTTTATCGAACGTGACGGCCTGCTGCACCAGAGTGACTTGCGTTTCATTGACGATCATCACGTCGAACGCGT GATGCAGCGCATCCTCGCACCGCTGGGCCGACGCCTGGACGAGTCCTCGCCGATGGTGGATGCGCGCTTGCCCGACGGCAGCCGGGTCAATGCGATCATC
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| Amino Acid Sequence |
>pilus assembly protein
MSDSLSQTFLAITRNTTDLEWLEGGPAPLGQVVSAGTGSLDELLALVDVTFANLVFVGLDRENLVAQSALIEGALEAKPMLAVVALGDGMDNQLVLNAMR AGARDFVAYGSRSSEVAGLVRRLSKRLPAVAHSAQLGGLTVLFGTQSNADGAMLATHLALVVQKSGQQTLLLDLGLPRSDSLALLGLESTFNFGDALRHL RRLDSTLINSAFTTALDGLRILAYATGDEPLKLTSAAELFMLLSALRQHFQHIVVNITGQPDSEALRTFVSHCDKLLWCTDQSVLDCRRNLAVLNRWREK GMKLDHAKLVVDRYIKACAPDIEALEKSFGLACIAVLPLSAELRLNVKNQGQPLFALAPREPLTQAVRTLGELLAKRSEGLAKPSMRWFERLLGSGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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