Pseudomonas fluorescens PICF7, PFLUOLIPICF7_RS01405
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PICF7, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTAGTGTTCCTCTGCCTCGCGGCCCTGTACGAAAGCTGGTCGATCCCGATCGCGGTGATCCTGGTAGTGCCCCTGGGGGTTGTGGGTGCGTTGATAG CGACCAGCATGCGCGGGTTGTCCAACGACGTGTTCTTCCAGGTGGGCCTGTTGGTAACGGTGGGCTTGGCGGCGAAAAACGCCATCCTGATCGTGGAGTT TGCCAAAGAGCTCCACGAACAAGGCAAAGGCATCGTCGAGGCGGCCATCGAGGCGTCACGCATGCGTCTGCGGCCGATCATCATGACCTCCATGGCGTTC ATCCTCGGCGTATTGCCGCTGGCGATCTCCTCGGGCGCAGGTTCGGGTAGCCAGCACGCCATCGGTACCGGTGTCATCGGCGGTATGATCACGGCCACTG TATTGGCGATCTTCTGGGTGCCGTTGTTCTTCGCAACCGTATCCGCTGCTGGCGAGCGTAAAAAGACTGACACAACTGAAACCCCTAAAGAGGCTGGCCA
|
|
| DNA Sequence for Gene |
>PFLUOLIPICF7_RS01405
ATGAGCAAGTCGCTACTTTCCCTAGCCGTCACGGCATTCGTGCTCAGTGGCTGCTCGCTGATACCTGACTATCAGCGCCCCGAAGCGCCGGTGGCCGCAC AGTTCCCGCAGGGGCCGGCGTATTCGTCGGCCCAGGCGCCGAGCCAGGCCGCTGCCGAGCAGGGCTGGAAGCAGTTTTTCCATGACCCTGCCCTGCAACA GCTGATCCAGACCGCGCTGGTGAACAACCGTGACCTGCGTGTCGCGGCCCTGAACATCGACGCGTATGCCGCGCAATACCAGATCCAGCGCGCCGACCTG TTCCCGGCCGTTTCGGCCACGGGCAGCGGCAGCCGTTCGCGCACTCCGGCCCGCCTGTCGCAGACTGGCGAGTCGACCATCAGCAGCCAATACTCGGCCG GTCTCGGGATCAGTTCTTATGAGCTGGACCTGTTCGGTCGCGTGCGCAGCCTGAGTGAAGAAGCCCTGCAAAAGTACTTCGCCACTGAAGAAGCGCGGCG CAGCACCCAGATCAGCCTGGTGGCCAGCGTGGCCAATGCCTACCTGACCTGGCAGGCCGACAAGGAACTGCTCAAGCTCACCCAGGACACCCTGGATGCC TACGAGCAGAGCTTCAAGCTCACCTCGCGCAGCAACGAAGTCGGCGTGGCCTCGGCCCTCGACCTGAGCCAGTCGCGGACCTCGGTGGAAAACGCCCGGG TTGCCCTGGCACGCTATACCCGCCAGGTGGCCCAGGACGAAAACAGCCTGACCCTGCTGCTGGGCACCGGCCTGCCGGCGAATATCACCAGCAAGCCGCT GTCGGATGACCTGCTCAGCGAAGTGCCGGCCGGCTTGCCATCGGACCTGCTGCAACGTCGTCCCGACATTGTGCAAGCCGAGTACAACCTCAAGGCGGCC AATGCCAACATCGGCGCGGCGCGTGCCGCGTTCTTCCCGAGCATCACCCTGACCGCCAGCGCCGGCACCGCAAGCCCGAACCTGGGCGGTTTGTTCAAGG GCGGTTCGGGCACCTGGTCGTTCGCCCCGCAGATCAACATCCCGATCTTCAACGCCGGCAGCCTGCGCGCCAGCCTGGACTATTCGAAGATCCAGAAAGA GATCAATGTGGCGAACTACGAGAAGGCGATCCAGACCGGCTTCCAGGAAGTGTCCGACGGCCTCGCCGCACGTGAAACCTACAAGCAGCAACTGGATGCC CAACGCGGATTCGTCGCAGCCAACCAGGATTACTACCGCCTGGCCGAGCGTCGCTACCGCATTGGTGTCGACAGCAACCTGACGTTCCTCGATGCCCAAC GCCAACTGTTCAGTGCCCAGCAATCGCTGATCACCGACCGCCTGGCGCAGCTGACCAGCGAGGTCAACCTGTACAAAGCCCTCGGCGGCGGCTGGAACGA GCAGACCGCGAAGAACGAGCCGTTGAAAGAAGAAGCACCGGCACTGAAGTTGTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGGTGTTGTAAAAAGTCGCACCGCTGCAAAAAAAACCGCTTCCCTCACCGGAAGCGGTTTTTTTATGCCTCACTTTTGCCCTGATAACTTGCGTTCGATC ATCGCCCACAACCCGCCCTTCCCCACTTTCCTCGCCCCCGCACCGCCCCGCACCATGGCCGCCACCTGCATAAACCCAATAACAACAGGTCCTTTCGCCA TGAGCACTTTCCACCCGCGCCGGCTGCTGCTGGCAACCGCTGTCGCCAGTCTCGCCCTGCCCGTCGTCGCCGAAGAACACGGTTTTCTCGAAGACGCCAG CGCCAACCTCAACCTGCGCAATTTCTTCTTCAACCGCAATTACACCAACCCCACCAAGGCCCAGGGGGGTGCGCAGGAGTGGACGCAGAGCTTCATCCTC GACGCCAAGTCCGGCTTTACCCAGGGCACTGTAGGTTTCGGCGTGGATGTGTTGGGGTTGTATTCGTTGAAGCTCGATGGCGGACGCGGCACCGGGGGCA
|
|
| Amino Acid Sequence |
>adeC/adeK/oprM family multidrug efflux complex outer membrane factor
MSKSLLSLAVTAFVLSGCSLIPDYQRPEAPVAAQFPQGPAYSSAQAPSQAAAEQGWKQFFHDPALQQLIQTALVNNRDLRVAALNIDAYAAQYQIQRADL FPAVSATGSGSRSRTPARLSQTGESTISSQYSAGLGISSYELDLFGRVRSLSEEALQKYFATEEARRSTQISLVASVANAYLTWQADKELLKLTQDTLDA YEQSFKLTSRSNEVGVASALDLSQSRTSVENARVALARYTRQVAQDENSLTLLLGTGLPANITSKPLSDDLLSEVPAGLPSDLLQRRPDIVQAEYNLKAA NANIGAARAAFFPSITLTASAGTASPNLGGLFKGGSGTWSFAPQINIPIFNAGSLRASLDYSKIQKEINVANYEKAIQTGFQEVSDGLAARETYKQQLDA QRGFVAANQDYYRLAERRYRIGVDSNLTFLDAQRQLFSAQQSLITDRLAQLTSEVNLYKALGGGWNEQTAKNEPLKEEAPALKLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|