Pseudomonas fluorescens PICF7, PFLUOLIPICF7_RS01400
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PICF7, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCCGGCGACAACGCCGCCAAAGTCAAGCTGACCCTGGAAGACGGCAGCGCCTATGGCGTGGATGGCAAGCTGGAATTCTCCGAAGTGTCGGTCGACCA GACCACCGGTTCCGTGACCCTGCGCGCCGTGTTCCCGAATCCTGACCACACCTTGCTGCCGGGCATGTTCGTTCACGCCCAGTTGCAAGCCGGTGTGAAC AGCAAGGCCATCCTGGCCCCGCAGCAAGGCGTAACCCGTGACCTCAAGGGCACTCCAACAGCGCTGGTCGTCAACGCCGACAACAAGGTCGAGCAGCGCG AACTGGTGGCCAACCGTACTTACGGCGCCTACTGGCTGGTGGAAAAGGGCTTGAACGCCGGCGACCGTGTGATCACAGAAGGCTTGCAGTACGTCAAGCC GGGCGCCGAGGTCAAGGTCAAGGCGGCCGACAACGCCAAACCTGCTGACGCCGGCAGTGCTGCTGCTCCTGCTGCCGCTGCTGGCAAAGGGGAGTAATCC
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| DNA Sequence for Gene |
>PFLUOLIPICF7_RS01400
ATGTCGAAATTTTTTATCGACCGCCCCATTTTCGCCTGGGTTATTGCCCTGGTGATCATGCTGGTCGGGGCACTGTCGATCCTGAAGTTGCCCATCAACC AATACCCGGCCATCGCGCCGACCGCCATCGACATCCAGGTGACCTACCCAGGCGCGTCCGCACAAACCGTGCAGGACACCGTGGTGCAGGTCATCGAGCA ACAGCTCAACGGCATCGACAACCTGCGTTATGTTTCCTCGGACAGTAACTCCGACGGCAGCATGACCATCACCGTAACGTTCAACCAGGGTACCAACCCG GACATCGCCCAGGTTCAGGTGCAGAACAAACTGAACCTGGCGACTCCACTGCTGCCGCAAGAAGTGCAGCAGCAGGGTATCCGCGTGACCAAGTCGGTGA AGAACTTCCTGATGGTGATCGGTCTGGTGTCGGAAGACGGCAGCATGACCAAGGACGACCTGTCCAACTACATCGTGTCGAACATCCAGGACCCGATTTC CCGGACCGCAGGTGTCGGTGACTTCCAGGTGTTTGGTTCGCAGTACGCCATGCGCATCTGGCTTGACCCAAGCAAGCTGAACAATTACCAGCTCACGCCA GTGGATGTCAGCACCGCGATCTCCGCACAGAACGTGCAGGTGGCTACCGGCCAACTGGGTGGCCTGCCTGCCCTGCCCGGCACTCAGTTGAACGCGACCA TCATTGGCAAGACGCGCCTGCAGACGGCGGAGCAGTTCGGCAACATCCTCATGAAAGTCAATACAGACGGCTCCCAGGTACGCCTGAAGGATGTCGCGCG TATTGAGCTGGGTGGCCAGAACTACAGCATCGCTGCACAGTTCAACGGCAAGCCGGCTTCCGGTATGGCGATCAAGCTGGCTTCGGGCGCCAACGCCCTG GACACCGGCAAAGCAATCCGTGCCACCGTAGCGCAGCTCGAACCCTTCTTCCCGCCAGGCATGAAGGCGGTGGTGCCGTATGACACCACCCCGGTCGTGA CCGAATCGATCTCCGGCGTAGTCCATACCCTGGTCGAAGCGATCGTGCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAACTTCCGTGCCACCATCAT CACCACCATGACCGTACCGGTGGTGCTGTTGGGTACCTTCGGGATCCTGGCGGCGTTCGGTTTCACCATCAACACCTTGACCATGTTCGGCATGATCCTG GCCATCGGCTTGCTGGTGGATGACGCCATCGTCGTGGTGGAAAACGTCGAGCGGGTGATGGCCGAGGAACACCTGTCGCCCAAAGAAGCGACGGTCAAGT CCATGGGCCAGATCCAGGGTGCCCTGGTGGGTATTGCCCTGGTACTGTCGGCGGTACTGTTGCCGATGGCATTCTTCGGTGGTTCCACCGGTGTGATCTA CAAACAGTTCTCCATCACCATCGTTTCGGCCATGGCGTTGTCGGTACTGGTTGCGCTGATCTTCACCCCGGCCTTGTGCGCCACCATGCTCAAGCCGATC GACCCGGAAAAACACGGCCAACCCAAGCGTGGTTTCTTCGGCTGGTTCAACCGCACCTTCGACCGTGGCGTACTGAGCTACGAGCGCGGCGTGGGTAACA TGATCAAGCACAAGATCCCGGCGTTCCTGGTGTACGCACTGGTTATCGCCGGCATGATCTGGCTGTTCATGCGCATCCCTGCGGCGTTCCTGCCCGATGA AGACCAGGGCGTGATCTTTGCCCAGGTACAGACGCCGGTCGGTTCTACGGCTGAACGGACGCAAAAAGTCATCGACGATATGCGCATCTTCCTGCTCAAC GACAAGGAAGGCGAGCCGGGCGAAGGCAAAGGCGTAAAATCGGTATTTACCGTAAACGGCTTCAACTTCGCCGGTCGTGGCCAAAGCTCGGGCCTGGCCT TTGTGATGCTCAAGCCGTGGGACGAACGTGACGCCTCCACCTCGGTGTTCGAGATCGCCAAGCGCGCCCAGGGCTACTTCATGCAGACCTTCAAGGACGC CATGGTATTTGCCATCGTGCCGCCGTCTGTACTGGAACTGGGTAACGCCACGGGCTTCGACGTGTTCCTGCAAGACCAGGGCGGTGTCGGCCACGATAAA TTGATGGCGGCGCGTAACCAGTTCCTCGGTATGGCAGCACAAAGCAAGATCCTGGCAGGTGTGCGCCCCAACGGCGTGAACGATGAGCCGCAGTACGAGC TCACCGTCGACGACGAGAAGGCCAGTGCCCAAGGCATCACCCTGTCGAGCATCAACCAGACCCTGGCGATTGCCCTGGGTGGCAGCTACGTCAACGACTT CATCGACCGCGGTCGGGTGAAGAAGGTGTACGTACAAGGTGAAGCCGCCAGCCGCATGTCGCCTGAAGACCTGAACAAATGGTACGTGCGCAGCGACTCC GGGAAGATGGTGCCGTTGTCCGCCATCGCGTCGGGCAAGTGGATCTTCGGTTCGCCGAAACTCTCGCGCTACAACGGTGTAGCGGCGATGGAAATCCTCG GTACTCCGGCACCGGGTTACAGTACCGGTGACGCCATGGCCGAAGTCGAGCGTATTGCCAAGCAACTGCCGGCAGGTATTGGCTATGCGTGGACCGGTCT GTCGTACGAAGAACGTCTGTCCGGCTCCCAGGCACCTGCGCTGTACGCCCTGTCGCTGCTGGTAGTGTTCCTCTGCCTCGCGGCCCTGTACGAAAGCTGG TCGATCCCGATCGCGGTGATCCTGGTAGTGCCCCTGGGGGTTGTGGGTGCGTTGATAGCGACCAGCATGCGCGGGTTGTCCAACGACGTGTTCTTCCAGG TGGGCCTGTTGGTAACGGTGGGCTTGGCGGCGAAAAACGCCATCCTGATCGTGGAGTTTGCCAAAGAGCTCCACGAACAAGGCAAAGGCATCGTCGAGGC GGCCATCGAGGCGTCACGCATGCGTCTGCGGCCGATCATCATGACCTCCATGGCGTTCATCCTCGGCGTATTGCCGCTGGCGATCTCCTCGGGCGCAGGT TCGGGTAGCCAGCACGCCATCGGTACCGGTGTCATCGGCGGTATGATCACGGCCACTGTATTGGCGATCTTCTGGGTGCCGTTGTTCTTCGCAACCGTAT CCGCTGCTGGCGAGCGTAAAAAGACTGACACAACTGAAACCCCTAAAGAGGCTGGCCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGTCGCTACTTTCCCTAGCCGTCACGGCATTCGTGCTCAGTGGCTGCTCGCTGATACCTGACTATCAGCGCCCCGAAGCGCCGGTGGCCGCACAGTT CCCGCAGGGGCCGGCGTATTCGTCGGCCCAGGCGCCGAGCCAGGCCGCTGCCGAGCAGGGCTGGAAGCAGTTTTTCCATGACCCTGCCCTGCAACAGCTG ATCCAGACCGCGCTGGTGAACAACCGTGACCTGCGTGTCGCGGCCCTGAACATCGACGCGTATGCCGCGCAATACCAGATCCAGCGCGCCGACCTGTTCC CGGCCGTTTCGGCCACGGGCAGCGGCAGCCGTTCGCGCACTCCGGCCCGCCTGTCGCAGACTGGCGAGTCGACCATCAGCAGCCAATACTCGGCCGGTCT CGGGATCAGTTCTTATGAGCTGGACCTGTTCGGTCGCGTGCGCAGCCTGAGTGAAGAAGCCCTGCAAAAGTACTTCGCCACTGAAGAAGCGCGGCGCAGC
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| Amino Acid Sequence |
>multidrug efflux RND transporter permease subunit
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPAIAPTAIDIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSDSNSDGSMTITVTFNQGTNP DIAQVQVQNKLNLATPLLPQEVQQQGIRVTKSVKNFLMVIGLVSEDGSMTKDDLSNYIVSNIQDPISRTAGVGDFQVFGSQYAMRIWLDPSKLNNYQLTP VDVSTAISAQNVQVATGQLGGLPALPGTQLNATIIGKTRLQTAEQFGNILMKVNTDGSQVRLKDVARIELGGQNYSIAAQFNGKPASGMAIKLASGANAL DTGKAIRATVAQLEPFFPPGMKAVVPYDTTPVVTESISGVVHTLVEAIVLVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMIL AIGLLVDDAIVVVENVERVMAEEHLSPKEATVKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKPI DPEKHGQPKRGFFGWFNRTFDRGVLSYERGVGNMIKHKIPAFLVYALVIAGMIWLFMRIPAAFLPDEDQGVIFAQVQTPVGSTAERTQKVIDDMRIFLLN DKEGEPGEGKGVKSVFTVNGFNFAGRGQSSGLAFVMLKPWDERDASTSVFEIAKRAQGYFMQTFKDAMVFAIVPPSVLELGNATGFDVFLQDQGGVGHDK LMAARNQFLGMAAQSKILAGVRPNGVNDEPQYELTVDDEKASAQGITLSSINQTLAIALGGSYVNDFIDRGRVKKVYVQGEAASRMSPEDLNKWYVRSDS GKMVPLSAIASGKWIFGSPKLSRYNGVAAMEILGTPAPGYSTGDAMAEVERIAKQLPAGIGYAWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESW SIPIAVILVVPLGVVGALIATSMRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHEQGKGIVEAAIEASRMRLRPIIMTSMAFILGVLPLAISSGAG SGSQHAIGTGVIGGMITATVLAIFWVPLFFATVSAAGERKKTDTTETPKEAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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