Strain | Pseudomonas fluorescens strain PCL1751, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
CCGCGTCTCGACCGCCTGGACTCCGCGCGCATCGGCAGCTCCCGTGCGATCACCCAACTGATCCTGAACCTGGTGGAAGGTACGCCGATCCGTCTGTTCG ACGGTGGTGAGCAGAAACGTTGCTTCACTGACATCGCCGACGGTATCGAAGCCCTGGCGCGCATCATTGATAACGACAACGACGCGTGCAACGGCCAGAT CATCAACATCGGCAACCCGGAAAACGAAGCCAGCATCCGCCAATTGGGCGAAGAGCTGCTGCGCCAGTTCGAAGCGCACCCGCTGCGTGGCAACTTCCCG CCGTTCGCCGGTTTCCGTGACGTGGAAAGCAAGGCGTTCTACGGCACCGGTTACCAGGACGTGGCACACCGCAAGCCAAGCATCGAAAACGCCAAGCGCC TGCTGAACTGGGAGCCGACCGTAGAGATGAGCGAAACCATCGGCAACACGCTGGATTTCTTCCTGCGTGAAGCGATGCTCGAAATCGCGGACAAAAAGTA
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DNA Sequence for Gene |
>PF1751_RS13570
ATGGATGCAGGTCTTCGCATCGACGTCGACACCTACCGCGGCACCCGTGAAGGTGTGCCACGGTTGCTCGAATCCCTGGACGAAGCCTCGGTAAAAGCGA CGTTTTTCTTCAGTGTCGGGCCGGACAACATGGGGCGCCACCTGTGGCGCCTCATCCGCCCGCAGTTCCTGTGGAAGATGCTGCGCTCCAACGCCGTCGG GCTGTATGGCCTGGATATCCTGCTGGCTGGTACCGCCTGGCCGGGCAAGCCGATCGGTCGCGACCTGGGGCACCTGATGCGCCAAGCCAAGGCGGCCGGG CATGAGGTCGGCCTGCACGCCTGGGATCACCACGGCTGGCAGGCCAACACCGGGCGCTGGAGCGAAGCGCAGTTGGTCGAGCAAATTCGACGCGGCGTGG AGAGCCTGAGCGACATCCTTGGTGAGCGCATTGACTGTTCAGCGGCCGCCGGTTGGCGCGCCGATGAACGCGTCGTGCAAGCCAAGCAAGGGTTCAACTT TCGCTACAACAGCGATTGCCGCGGCACTAGCCTGTTTCGTCCCACCCTGGCCGATGGCAGTGCGGGTACCCCACAGATTCCGGTGGACCTGCCGACCTTC GACGAAGTCGTCGGGCCGGTAGTGGCTGCCAAGGACTTCAATACGTTCATCCTCGACCGCTTTGCCGAGTCGAAGCTCAACGTCTACACGATCCACGCAG AGGTAGAAGGGATTCTGATGGCCAATGAGTTCCGCCAGTTGCTCGCCCAGGCAGGGCAGCGCGGCATCGATTTCAAACCGTTGGGCGAGTTGTTGCCGGC GGACCTGACCACCCTGCCCCAGCAACAGATGGTGCGCGGCGTCTTGCCCGGTCGCGAGGGTTGGCTTGGAGTGCAGCAGGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TTCGCCGTTGGGCCCTGCCCCTGCTCCTGCTGGCGTTTGGCGTGTTTTACCTGCTGCCACTGGCTACCCATGGTCTGTGGATTCCGGATGAAACCCGTTA TGCGCAAATCAGCCAGGAAATGCTGCTGACCGGAAAATGGGCGTCGCCGCACTTCATGGGTATCCGTTACTTCGAGAAACCGGCGGCCGGTTACTGGATG ATCGCGCTGGGCCAGGCGATCTTCGGGCAGAACCTGTTCGGCGTGCGGTTTGCGTCGGCGTTGAGCACCGGATTGAGCATCCTGTTGGTGTACCTGGTGT CGCGTCGGTTGTGGAATGACCCGCAGAAGAGCCTGATCAGCACCGTGCTGTACATGAGTTTTGTCAGCGTGGCGGCCCTGGGCGGTTATGCCAACCTCGA TCCGCAGTTCACGTTCTGGGTGAACCTGACGGGCGTGGCCTTGTGGTTTTGCTTTGACAGCACGACCCGCAATGGACGACTCGGCGCCTGGGCGCTGTTG
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Amino Acid Sequence |
>4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase
MDAGLRIDVDTYRGTREGVPRLLESLDEASVKATFFFSVGPDNMGRHLWRLIRPQFLWKMLRSNAVGLYGLDILLAGTAWPGKPIGRDLGHLMRQAKAAG HEVGLHAWDHHGWQANTGRWSEAQLVEQIRRGVESLSDILGERIDCSAAAGWRADERVVQAKQGFNFRYNSDCRGTSLFRPTLADGSAGTPQIPVDLPTF DEVVGPVVAAKDFNTFILDRFAESKLNVYTIHAEVEGILMANEFRQLLAQAGQRGIDFKPLGELLPADLTTLPQQQMVRGVLPGREGWLGVQQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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