Strain | Pseudomonas fluorescens strain PCL1751, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
GACAGGACCATCAGGTAGCAATCGGCGTGACCAACCCCGGTGACGCGATTGCCAGCGAACACTTGCCGCGCCTGTTCGAACGCTTCTATCGAGTTGATGC ATCGCGCAGCAACAGTGGGGCCAATCACGGCCTGGGCCTGGCCATCGTCAAGGCGATTGCCCTGATGCACGGCGGCGATGTGTTCGTACGCAGCGACGGC GGTGGGAATACGTTTGGCATTACCCTGCCGGTCTAACGCCTGACTGTTGCGATTTGGGCAACAGTCATTATCTTGTTACACTCTGTATCGCACCGCTCGC CTGCGTTAATTTGACGCATCGATGAGCGCGACGGCAAAGGCAGTCTCCGCTTACCCGAATTTCCCTCGACTTTTTTCCAGGGCTCTACACTGGGAATCTG TCTTAAAGCCGCTGACTTCAGCGGCTTTTTTTTGCCGTAAAAAAGGCCAGGCACCCCCAACGACACTGGCCGTTTTCGATTGACCAAAGGAGCTCCACCG
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DNA Sequence for Gene |
>PF1751_RS04670
GTGAAGAACTCGCTGACGTTCACCCCGTTATTCCTCGCGATTGCAGCAACGATTGCCCCCCTTGCCCACGCGGCAGACTCCACCACCGCCGACGGTTTCG TCGAAGGTGCCCACCTCAATATCAACACCCGCAACTACTACATGAACCGCGACCGTCGCGATATTCACACCGATGACAGCAAGGAATGGGGCCAGGGGTT TCTCGGCATCTTCGAGTCCGGCTACACCCAGGGCACGGTCGGTTTCGGCCTGGACGCCCACGCCATGCTCGGCCTCAAACTGGACGGCGGTGGCGGCACC GATGGCTCCAGCATCCTTCCGTACGGCAGCGGCAACGGCAAGGCGCCCGGCTCGTTCTCGACGGCCGGTGGCACCTTGAAAATGCGCGCATTCGATACCG AGCTGAAAGCTGGCGACCTGTTCCTCAATAACCCGGTGATTGCCGGCGGCGCGACCCGCATGTTGCCGCAGACTTTCCGTGGCGTGAGCCTGACCAACCA CAGCCTCGACGGTTGGATGTTCGAAGGTGGCCAGGCCAGCTTCACCAAGCTCTATAACCAGAGCGGCCACCGTCGCATCGGCACCAGCTACGGCGCGCTG CCCGAGCACACGGACAGCCAGCACATGAACTGGGCCGGCGTGTCGTTCAGCGGTATCGACGGGCTGACCAGCAACCTCTACGCCGCCGAACTCAAGGACG TGTGGAATCAGTACTACTACGACCTGGACTACACCTATGTGCTGAACGAGATGATCAGTCTCAACCCCGGTCTGCATTACTACCACACCCAGGACACCGG GCAGTCGCTGCTGGGGGATATCGACAACAACACCTACAGCCTGCACTTCACCGTGGACGTCGGCCATCACAGCGTCACTGCCGCGTACCAGAGGGTCAAC GGCAACACGCCGTTCGACTACATCGCCCAGGGCGACAGCGTGTACCTGGACAACTCACAGCAATACTCCGACTTCAACGGCCCCAATGAGCGTTCCTGGA AACTCAAGTACGCCTATAACTTCGGTGGACTGGGCCTGCCCGGCTTGACCTCGGCGGTGTCCTACATCAGCGGCAAGACCGACCTGACCAAGGTCGACCC GCAAAGCCGGGGCTATAGCGCCTGGTACAGCGCTGACGGCAAAGACGCCAAACACTGGGAACGGGATATCGACCTCAAGTACGTGGTACAGGGTGGCAAA GCCAAAGACCTGGCCGTGCGCCTGCAGTGGGCGACCAATCGCGGCAGCAACGGCTACTCGGCGGTGGATCGAGACGTGGATGAATACCGAGTGATCGTCG ATTACCCGATCAACGTGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CACCCAGATCTTTCTTTTTTATCGGGTATTTAATTTTCATCGGGTAGATCTAAACTGCCAGTATTGTCCCGCTGAAGTCTGCCCGATGAGTCCTCCCCGC GTTCGAAGCTTACCGGCACGCCCAGAGCTATTTCTGATTCTGGGCAGTGGCCTTACTGTCGTCCTGATCGTGGTCATCGTCGCGGTGTTGCTGATCCGCG AACACGCGAGCACCCTGCAGGCCGCGACGCGCTCAACCACCAATATTGCGCAGTTGATCAATGCCGACGTGCTGCGTAACGTCGAACTCTACGACCTGGC CCTCAAAGGGTTGATTGCTGCCAGGCAACGTGAGGACCTGGCCCAGGTTTCCGCAAATATCCAACACTTGGTGCAGTTTGACCTGTCCACCGCTGCGCCT TTCAAAGGTGAAGTGCTGTTGTTGGATGCCAATGGCACAGTGATCGCCGATTCTTCCACCCTGCAGCCCACCCCACGCAATTTTGCCAACCGCGATTACT
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Amino Acid Sequence |
>porin
MKNSLTFTPLFLAIAATIAPLAHAADSTTADGFVEGAHLNINTRNYYMNRDRRDIHTDDSKEWGQGFLGIFESGYTQGTVGFGLDAHAMLGLKLDGGGGT DGSSILPYGSGNGKAPGSFSTAGGTLKMRAFDTELKAGDLFLNNPVIAGGATRMLPQTFRGVSLTNHSLDGWMFEGGQASFTKLYNQSGHRRIGTSYGAL PEHTDSQHMNWAGVSFSGIDGLTSNLYAAELKDVWNQYYYDLDYTYVLNEMISLNPGLHYYHTQDTGQSLLGDIDNNTYSLHFTVDVGHHSVTAAYQRVN GNTPFDYIAQGDSVYLDNSQQYSDFNGPNERSWKLKYAYNFGGLGLPGLTSAVSYISGKTDLTKVDPQSRGYSAWYSADGKDAKHWERDIDLKYVVQGGK AKDLAVRLQWATNRGSNGYSAVDRDVDEYRVIVDYPINVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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