Pseudomonas fluorescens MEP34, RU10_RS07640
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain MEP34 contig_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGCGCAGGCCAAAGCCCGCGACAAGGGCCGCAGTTTGAACCTCGCTCCCCGCGCCTGACAACCCTAGGGGGCGTTCTCAATTAGTTTTCACACCGCGTT GTCGCCTTAAAGCCAGCCAGGCAAGGCGCAGGCCGCTGGGAATGGTTGTTCCCTTTCCAAGGCCTGCAACGCAGACTGGCCGGCTTTAAGGCACAACCCG AAGGGCCGGCCTGCTGTTGTGCAGGGCTGCGTTGCTAGAAGCTTATCTGGAATGACCAAACCACGCTTCTCGCGCCTTGTCCTGCACAACAGCAGACCCG GCGCGGTGTGAAAACTAATTGAGAACGCCCCCTAGGTTGTACGATCAGCAAAGGATTATAGAGATGGATGAGTGTGTGCAGTGACAGGCGCACCCAATCA CAGGATAATGCCGCATCTTTTTTCGACCGCTCTGCATGGCGGGCGGTCGATGTGTTTGCTTGTTTGGCCGCCTTAGCCTGACAACCCTGGAGTGTCTGGT
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| DNA Sequence for Gene |
>RU10_RS07640
TTGATCGTCTTCCGTTATCTGTCCCGCGAAGTCCTGTTGACCCTCAGCGCCGTAAGTGCCGTGCTGCTGGTCATCATCATGAGCGGTCGCTTCATCAAAT ACCTGGCGCAGGCTGCGGCCGGTCAGCTCGATCCGGGCTCGCTGTTCCTGATCATGGGCTTTCGTCTGCCGGGTTTCCTGCAACTGATTCTGCCGCTGGG CCTGTTCCTCGGGATCCTGCTGGCCTACGGTCGCCTGTACCTCGAAAGCGAAATGACCGTGCTCTCGGCCACCGGCATGAGCCAGCAGAAACTGTTTCGC ATGACCCTGTTTCCGGCGACGCTGGTGGCACTGGTGGTGGCGTGGCTGAGCCTTGGCCTGGCTCCGCAGGGCGCCAACCAGTTTCAGCTGTTGCTGAACA AGCAGGACGCGCTGACCGAGTTCGATACGCTCGAACCGGGCCGCTTCCAGGCGTTGCGTGACGGTACTCGAGTGACCTATACCGAAACCCTGAGCGACGA TCGAGTCAATCTCGGCAGCGTGTTCATCTCGCAGAAAAACCTTGGCGCCGACCAGAAGGATCGCGGGATTTCCGTGTTGGTTGCCGAATCGGGCCGTCAG GAAATTCGCCCCGACGGCAATCGCTACCTGATTCTCGACAACGGTTATCGCTATGACGGCAGTCCGGGTCAGGCCGACTATCGTGCCATCCATTACGAAA CCTACGGCGTGCTACTGCCCAAGCCGGATGTCAGCGAAGAAGTCACCGATCGTGACGCGATGCCGACCTCGTCCCTGTGGGGCAGTGACGACATCCGTTC GAAAACCGAACTGCAATGGCGCATGTCCCTGCCGTTGCTGGTGTTCATCGTGACCCTGATGGCGGTGCCGCTGTCGCGGGTGAATCCGCGTCAGGGGCGT TTCCTCAAGCTGCTGCCGGCGATTCTTCTTTATATGGCTTACCTGACCATCCTGATTGCCGCCCGCGGCGCCCTCGAAAAAGGCAAGATCCCGCCGGCCC TTGGCTTGTGGTGGGTGCACGCGATCTTCCTGGTCATCGGCCTCGGCCTGCTCTATTGGGAGCCGATGCGCCTGAAGCTGGCCAGCCGTCGCAGCGCCGC GCTGGAGGTGGCCCGTGGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACTCGACCGCTACATCGGCAGCAGCGTATTCATGGCGATCATCGCCGTGCTGGCGATCATCCTCGGCCTGGCGACGCTGTTTGCCTTCATCGATGAAATG GGCGACGTCAGCGACACCTACACCTTGGTCGATGTGCTCGGTTTCGTGGTGTTGACCGCGCCGCGCCGGCTCTACGAAATGCTGCCGATGGCTGCACTGA TCGGCTGCCTGATCGGTCTCGGCAGTCTGGCCAGCAGCAGTGAGCTGACCGTCATGCGCGCCGCCGGCGTGTCGATCGGCCGTATCGTCTGGGCCGTCAT GAAGCCGATGCTGGTGCTGATGCTCGCCGGCGTGCTGATCGGCGAATATGTCGCCCCGGCCACCGAGAGCATGGCCCAGGCCAATCGCTCGCTGGCCCAG GGCAGCGGCGATGCGCAAAGCGCCAAACACGGTATGTGGCACCGTCAGGGGGAAGAATTCATCCACATCAACGCGGTGCAACCGAACGGTCTGTTGTACG
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| Amino Acid Sequence |
>permease
MIVFRYLSREVLLTLSAVSAVLLVIIMSGRFIKYLAQAAAGQLDPGSLFLIMGFRLPGFLQLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQKLFR MTLFPATLVALVVAWLSLGLAPQGANQFQLLLNKQDALTEFDTLEPGRFQALRDGTRVTYTETLSDDRVNLGSVFISQKNLGADQKDRGISVLVAESGRQ EIRPDGNRYLILDNGYRYDGSPGQADYRAIHYETYGVLLPKPDVSEEVTDRDAMPTSSLWGSDDIRSKTELQWRMSLPLLVFIVTLMAVPLSRVNPRQGR FLKLLPAILLYMAYLTILIAARGALEKGKIPPALGLWWVHAIFLVIGLGLLYWEPMRLKLASRRSAALEVARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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