Pseudomonas fluorescens MEP34, RU10_RS06975
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain MEP34 contig_8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGCATTCATGGACAACACCCCGCAACTGAGCCTGGCGCCCTATGCGCATCAGGTCGGGCTGGTGGTGTTGCGTTCGTTCGGCAAGTTTTTCGGTCTGG CCGGGGTGCGCCTCGGTTTCGTTCTGGCCGAGCGCAAGTTGCTCAAACTGCTCGCCGAACAGGTCGGGCCGTGGGCGGTGAGCGGGCCGACGCGAGTGCT CGGCACGGCGTGCCTGCAAGACACCGAGGGCCACACCCGTCAGCGGATTCGCAGTGACCAAGCGAGCGAGCGTTTGGCGGCGTTGCTGACCCGTTGTGGC TTCGCGCCGCAGGGTGGCTGCGCGCTTTTTCAGTGGTTGATCACCGAGCAGGCGGAAGCGCTGCACGAGTTCCTCGCCCGGCGCGGCATCCTCCTGCGGC TCTTCACGCACAACAGCAGTGTGCGCTTCGGCCTGCCTGCCGATGCCGCGCAAGAACTGCGCCTCGAACAGGCTTTGCAAGCTTTCGCCAAGGAAAAACC
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| DNA Sequence for Gene |
>RU10_RS06975
ATGACCACTCTGATGGTGCAAGGCACCACCTCCGACGCCGGTAAAAGCACCCTGGTGACGGCGCTGTGTCGGTGGGCCACTCGCCAGGGCGTGGCGGTGG TGCCGTTCAAGCCGCAGAACATGGCGCTCAACAGCGCGGTGACGGCTGACGGCGGCGAGATCGGCCGGGCGCAGGCGGTGCAAGCGCAAGCGGCGCATCT TCAGCCGCACACTGACATGAATCCGGTACTGCTCAAGCCCAACAGCGACACCGGCGCACAAGTGATCATTCATGGCCGCGCCGTGACGACGATGAACGCC GTTGCCTATCACGATTACAAAGCCATCGCGATGCAAGCGGTGCTCGCTTCCCACGCGCGGCTCAGCGCGACGTATCCGCTGGTGATGGTCGAAGGCGCGG GTTCGCCAGCAGAGATCAACCTGCGCGCCGGCGACATTGCCAACATGGGCTTTGCCGAAGCGGTGGATTGCCCGGTGCTGCTGATCGCCGACATCAATCG CGGTGGCGTGTTTGCGCATCTGGTCGGCACGCTGGAGTTGCTGTCGCCAAGCGAACAGGCGCGGGTCAAAGGCTTCATCATCAACCGCTTTCGCGGCGAC ATCGCCTTGCTGCAACCGGGCCTCGACTGGCTCGAACAGCGCACCGGCAAACCGGTGGTCGGCGTTTTGCCCTACGTGATGGATCTGCACCTTGAGGCTG AAGACGGCATCGACCAGCGCCAGACCGACAAGGCCGAGCAGGTGTTGAAAGTCGTTGTGCCGGTGCTGCCGCGCATCAGTAATCACACCGACTTCGACCC GCTGCGTCTGCATCCGCAGGTCGATCTGCAATTCGTCGGCCCGGGGCAGGCGATTCCGGCCGCCGACCTGATCATCCTGCCGGGCTCGAAAAGCGTGCGC AGTGATCTGGCTTATCTGCGCGCCAACGGCTGGGACGCAGCGATCAATCGGCATCTGCGCTACGGCGGCAAGGTGCTGGGGATTTGCGGCGGTCTGCAGA TGCTCGGTGAGCAGGTGCACGACCCGCTCGGCCTTGAAGGTATTGCCGGCTCCAGCGCGGGTCTGGGTCTGCTGGCGTTTGAAACGCAGCTTGAAGCCGA GAAACAACTGCGCAATGTGCATGGCCGGCTGGCGCTGGAAAACGCTGAAGTCAGCGGTTATGAAATTCATGCTGGCGTGACCACCGGGCCGGCGCTGGAG AACCCGGCGGTACATTTGGACGACGGTCGTTGCGATGGTGCGCAAAGTGCCGATGGCCAGGTGTTCGGCACCTATCTGCATGGCTTGTTCGAATCCCCCG AGGCGAGCGCGGCGTTGTTGCGCTGGGCCGGGTTGAGTGATGTGCAAGAGGTCGATTACCACGGCTTGCGCGAGCGCGATATCGAGCGGCTGGCGGATCT GGTGGAAAAACATCTGGATACCGGGCTGTTGCGTCAGCTCTGTGGGATTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTGGCCAGGCTGGCCTCATCGCGAGCAGGCTCACTCCTGCATTTGAAATGCGGTCCCCTGTAGGAGTGAGCCTGCTCGCGATAGCGCCGGTCGCCTCAA TACATAATTTTCAGGATGTTCTCATGCTCCAACTGATCCTCGGCGGCGCCCGCTCCGGCAAAAGTCGTCTGGCGGAAAAACTCGCCAGCGACAGCCATCT CGCCGTGACCTACATCGCCACCAGCCAGCCGCTCGACGGCGAGATGAACCAGCGCGTCGCCCATCACCGCGCGCGCCGACCCGCCGAATGGGCGTTGATC GAGGAACCGCTGGAACTGGCCCGCGTGCTGCGCGAATCTGCCGACGCCGAGCGCTGCCTGCTGGTTGATTGCCTGACCCTGTGGCTGACCAATCTGCTGA TGCTCGACGACGCCGAGCGTCTCGCCGCCGAGCGTGAAGCCCTGCTTGACTGCCTGGCCACGCTGCCGGGTGAAATCATTTTTGTCAGCAACGAGACCGG
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| Amino Acid Sequence |
>cobyric acid synthase
MTTLMVQGTTSDAGKSTLVTALCRWATRQGVAVVPFKPQNMALNSAVTADGGEIGRAQAVQAQAAHLQPHTDMNPVLLKPNSDTGAQVIIHGRAVTTMNA VAYHDYKAIAMQAVLASHARLSATYPLVMVEGAGSPAEINLRAGDIANMGFAEAVDCPVLLIADINRGGVFAHLVGTLELLSPSEQARVKGFIINRFRGD IALLQPGLDWLEQRTGKPVVGVLPYVMDLHLEAEDGIDQRQTDKAEQVLKVVVPVLPRISNHTDFDPLRLHPQVDLQFVGPGQAIPAADLIILPGSKSVR SDLAYLRANGWDAAINRHLRYGGKVLGICGGLQMLGEQVHDPLGLEGIAGSSAGLGLLAFETQLEAEKQLRNVHGRLALENAEVSGYEIHAGVTTGPALE NPAVHLDDGRCDGAQSADGQVFGTYLHGLFESPEASAALLRWAGLSDVQEVDYHGLRERDIERLADLVEKHLDTGLLRQLCGI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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