Pseudomonas fluorescens MEP34, RU10_RS06965

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain MEP34 contig_8, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GTCGGCCTGATGCAGCCCTGGCGCTTCATCCGTATCAGCGATCGCGTTCTGCGCGGGCAGATCCGCGATCTGGTGGAAGCAGAACGCATCCGCACCGCCG AAGCCCTCGGCGAGCGCAGCGATGAGTTCATGCAGCTCAAGGTCGAAGGCATCAACGATTGCGCCGAAGTGCTGGTCGCGGCACTGATGGACGATCGCGA AAAACACATCTTCGGTCGGCGCACGTTGCCGGAAATGGACATGGCCTCGTTGTCCTGCGCGATCCAGAATCTGTGGCTGGCGTCCCGTGCCGAAGGCCTG GGCATGGGCTGGGTCTCGCTGTTCGAGCCGCAGGCCCTGGCGGACTTACTCAAGTTGCCGGCCGGTGCCAAGCCGCTGGCGGTGCTATGTCTGGGCCCGG TAAAGCAATTCTATCCAGCGCCGATGCTGGTGCTCGAAGGCTGGGCGCAGGCGCGGCCGCTGAACGAGTTGCTGTACGAAAACTATTGGGGAGTGAGTCA
DNA Sequence for Gene
>RU10_RS06965
ATGAGTGTGGCGTTGCTGAGTGTCGCTGCGGTAGCGCTGGATGCGCTGCTCGGTGAACCGAAACGCTGGCATCCGCTGGTGGCATTCGGCAATTTTGCCG GGCGCATCGAGCAACGTTTCAACGCCGGCGGTCGTGGCTGGCGCAGCCATGGCGTGACCGCGTGGGTCCTCGCGGTGCTGCCGCTGACCTTGCTTGCCAC CGCATTTTCCTGGGCGCCCTATGTGGGCTGGATCGTCGAGATTCTCGCGCTGTATTGCGCGCTGGGCATGCGCAGTCTCGGCGAGCATGTCGCGCCGGTC GCGGCGGCGTTACGCGCCGATGATCTGGACGAGGCGCGCAAGCGTGTCGGTTATCTGGTCAGCCGTCAGACCGATGAACTCGACAGCACTGCCGTAGCCC GCGCCGCCACGGAGTCAGTGCTGGAAAACGGCAGCGATGCGGTGTTCGCTGCGCTGTTCTGGTTTGTCGTCGCCGGCGCACCGGGCGTGGTCCTGTATCG CTTGAGCAATACCCTCGATGCGATGTGGGGTTATCGCAACGAACGCTTTGAACGTTTCGGCTGGGCGGCGGCGAAGATCGACGACGTGTTGAACTACATT CCTGCGCGTCTGGTGGCGTTGACCTACGCGCTGCTCGGCAAAACCCGACTCGCGCTCAAATGCTGGCGCACCCAGGCGCCGCAGTGGGATAGCCCCAACG CCGGCCCGGTGATGGCGGCAGGTGCCGGTGCGCTGGGCGTCGAACTGGGTGGCCCGGCGATCTATCACGGCGAACTGCACGAGCGCCCGCAACTGGGCGA AGGTGCGCCGGCCGATGCCGACTCCATCGACCGTGGCTGGCAATTGGTCCAGCGCGGCGTATGGTTATGGCTGCTGATGCTTTGCCTGGGGGCGGAATTT TATGCTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCACGGTGGCCGGCTGCGCAAGGCTGCACTCGATTACGGGATTGCCGAGGCTGACTGGCTCGACTTGTCCAGCGGCCTCGCGCCGTGGCCATTTGCGATC CCGGAGATCCCGCTGCGCGCCTGGGCCCGCCTGCCGGAAACCGACGACGGCCTGGAACAGGCAGCCTGCGATTACTACGGCGCCGCGCAGGTGTTGCCGG TCGCTGGTTCGCAAATGGCCATCCAGTTGCTGCCGCGTCTGCGCCGGGCCGGCAAGGTCGGCGTGTTGTCGCCGTGCTATGCCGAGCATGCCGAAGCGTG GCGGCGCAGCGGTTACATCGTCCGTGAGGTGCTGGAGCAGGAAGTCGAGTTCTTTCTCGACAGCCTCGACGTGCTGGTGGTGGTCAACCCGAACAATCCG ACCGGCCTGAGCCTGACCCCAGCACGCCTGCTCGACTGGCATGCGCGGCTGGCGCAACGCGGCGGCTGGCTGGTAGTCGATGAAGCATTCATGGACAACA
Amino Acid Sequence
>cobalamin biosynthesis protein CobD
MSVALLSVAAVALDALLGEPKRWHPLVAFGNFAGRIEQRFNAGGRGWRSHGVTAWVLAVLPLTLLATAFSWAPYVGWIVEILALYCALGMRSLGEHVAPV AAALRADDLDEARKRVGYLVSRQTDELDSTAVARAATESVLENGSDAVFAALFWFVVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWAAAKIDDVLNYI PARLVALTYALLGKTRLALKCWRTQAPQWDSPNAGPVMAAGAGALGVELGGPAIYHGELHERPQLGEGAPADADSIDRGWQLVQRGVWLWLLMLCLGAEF YA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site