Pseudomonas fluorescens MEP34, RU10_RS03835
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain MEP34 contig_6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCGCCGGCACGCAACAGGGTGCCGACCCGCTCTTTCATTTCGCGCGCGGCCTTGTTGGTAAAGGTCATGGCGACGATGTACTGCGCGCGGATGCCGCAG TTCTGGATCAGGTGCGCGATCTTGCGCGTGATCACGCTGGTCTTGCCGGAGCCAGCACCGGCGAGCACCAATAGAGGGCCGCCGACGTAGTTCACGGCTT CTTGCTGCCGGGGATTGAGTCGGGACATACGAAAATTCGGGAGTCGTTGACGAAATGGGCCGGCATTTTAACAGGCTCAGCGATTTGTGCTGCTCTGTCC GACTTGTGACGCAACACGCGATTCAGATTTGCCGGTTTTGTTACTTTCACGCAGGATACGCGGGGATTTTGCGGCTAATGTTCTCATTCGTGACACAAAA TAACCTTTCACTGCCGTTGTCATCGGACAACGCATTGGTCATTGTTCAGCACACCGGCATAATGCCCCGCCTACATCATTGCAGAGTCTAGGGAGTCAGC
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| DNA Sequence for Gene |
>RU10_RS03835
TTGTCTACGCCTGTCGAACCCTTGCGTTTGCTGCTACTGGCCGAAGAGCCAGCGTGGACAGCGTTGTTGCGTGAGTGTCTGGCTCCGATGGGGAGCGCGG CGGTGCTGATCAGCGCGCCGAACTGGGATTCGGTCAGCCGCCTGTTCGAGGACAACCGCCACGCGGTGCTGCTGACCCTGCCGGCATTGCAGCCGGCGCC CGGGCGCTGCAGCCTGCCGACCGTTCTGCTGCTGGAGCATGAACCGGCCACCGCGCCGGTAGGGGTCAGCGACTGGCTGGTCTTCGACGCCCTCGACGCT GGCATGCTCCAGCGTTGTTTGCGCCATGTTCGCGAGCGCGGCGTGCTGGAAAATACCCTGCAGCGCCTCGCCGAACAGGATCCGCTGACCGGCATCGCCA ATCGCCAGGGTTTCCAGACCCTGCTCACCGCACGTCTTGCCGAAGGCGACGGTCGCGGCCTCGCCCTTGGCCATCTCGATCTCGATAACTTCCGCCATGC CAATGATGCTCTTGGTCATCAGGCTGGCGATCGTCTGATCCTGCAAGTCGTCGCGCGCCTGAAAAGTCAGCTGGAGGCCGGTGATCAACTGGCGCGGCTG GGCAGTGATGAATTTGCTTTGCTGATCGACACCCGCCGCGCGCCGCAACGCGCCGAGTGGATGGCCGAGCGCATTACCGAGGCGTTGGCCGAACCTTATT GGGTCGACGGTGAGAGCCTGCTGATCGGCTCCAGCCTCGGCATCGCTCACGCCCGCGCCAACGGCGGTGCCGATCCATTGATGTGGCACGCACACATCGC CATGCAGCAGGCCAAGAGCACGCAGGGCTGCACCTTTCATATCTTCAATGAGCGCATCAACCGCAATGCGCGGAGCATGGCTGACCTCGAAAGCGAACTG CGCCGAGCCCTGCGCCGCGACGAGCTGGAGCTGCATTACCAGCCACGCCTGAATCTTGAGGATGGCCAGATTGTCGGCCTCGAAGCGCTGGTGCGCTGGC GCCATGGGGAACGCGGTCTGCTGCCGCCGAGCGAATTCGTGCCACTGGCCGAGCAAAGCGGATTGATCGTGCCGCTGGGTTACTGGGTGATTGCCCGGGC ACTGCGGGATATGCAGGCTTTGCGCGAGCAGGGTCTGCCGCCGCTGCACATGGCGATCAACCTGTCGTTCCGGCAGTTTCAGGACAGCCAGTTGCTGCCG ACGCTCAGTCGTCTGATTGCCGAGCGTGGCGTGGAAGCACAGTGGCTGGAATTCGAACTGACCGAAACCGCGGTGATGCGGCGCAGCGATCTGGTCAAGC AGACCATGGACGCTCTCGGCCGCCTCGGCGTGCGCTTCTCGCTGGACGATTTCGGCACCGGTTTTTCTTCGTTCGTGCACCTCAACAGCCTGCCGATCAC TTTGCTGAAGATCGACAAGAGTTTTGTCGGCGGTATGGAACAGCGCGAAGAGAACCGCAAACTGGTGCACGCGATGATCAACCTCGCGCACAACCTGCAC CTGGAAGTGGTTGCCGAAGGGGTCGAGACGCCGGAGCAGCTGGACTTGTTGCGCGGGTTCGGTTGCGATCAGGTGCAGGGTTATCTGATCAGCCGGCCGT TGCCGCTGGAGGAGCTGGTGGAATACCTGACGTCGGGATCGAGCCAGCAGCCGGCTCTGGAAATCGTCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCACCACCCCCTGTAGGAGTGAGCCTGCTCGCGATAGCTTTTCAACAGTCAACATTTGCATTGACTGATATACCGCAATCGCGAGCAGGCTCACTCCTAC AGAGGACCTCATTCGGCCTGGGGGATGTTAAAACCTTGAGCTTGCGGCTCGCGCCGAATCATCCGCTGCATCTTCCATTCAAACCCCAGCGTCAGGCTCA CTGCCGCGCACGCCAACCCCAGCGCCAGTCCCCACCAGACACCGGTCGGCCCCCAATTGAGGTGGAAAGCCATCCACCATGCCGCCGGCGCGCCGATCAG CCAATAGCAAGCCAGGCCGACCAGGAATGTGGTCTTGGCATCCTTGAGCCCGCGGATACAGCCCATGGCAATCGTCTGCGTGCCGTCGAACAACTCGAAC CACGCCGCTACTGCCAGCAGGCTCACCGCCAGACGGATCACCTCGGCAAACGCCGGGTCGTTATGGTCGAGGAACAGGCCGACCAACTGGTTCGGCCACA
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| Amino Acid Sequence |
>diguanylate cyclase
MSTPVEPLRLLLLAEEPAWTALLRECLAPMGSAAVLISAPNWDSVSRLFEDNRHAVLLTLPALQPAPGRCSLPTVLLLEHEPATAPVGVSDWLVFDALDA GMLQRCLRHVRERGVLENTLQRLAEQDPLTGIANRQGFQTLLTARLAEGDGRGLALGHLDLDNFRHANDALGHQAGDRLILQVVARLKSQLEAGDQLARL GSDEFALLIDTRRAPQRAEWMAERITEALAEPYWVDGESLLIGSSLGIAHARANGGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSMADLESEL RRALRRDELELHYQPRLNLEDGQIVGLEALVRWRHGERGLLPPSEFVPLAEQSGLIVPLGYWVIARALRDMQALREQGLPPLHMAINLSFRQFQDSQLLP TLSRLIAERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKIDKSFVGGMEQREENRKLVHAMINLAHNLH LEVVAEGVETPEQLDLLRGFGCDQVQGYLISRPLPLEELVEYLTSGSSQQPALEIVG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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