Pseudomonas fluorescens MEP34, RU10_RS24770
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain MEP34 contig_38, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGGGCGGGTCGGGGTTGAGGATTTGCCGGTGATGATTCGGCAAGCGCGGCCGGCGGTTGTGGCGGCCGACACTGCCGCACAGCCACTGGAAGATGCCG AGCGTCTCGCATTGCTGAGTGCGCTGGAGCAGACGCGTTGGCACATGACCCATACAGCGCAGCAACTGGGCGTAAGCCGCAACACCCTTTATAGAAAACT GCGTAAACACGGAATTGAGCGGCGTGTCAGCTGAAAGCCCTCACCCTAACCCTCTCCCAGAGGGAGAGGGGACTGACCGAGGTGTTTTGGCGATTTACGC CGACCTGAAATATCGAGCCGAACTCAGGATTTGAAGGCGACCGAGATCGGCTCCCTCTCCCTGGGGAGAGGGCTGGGGTGAGGGGCGACGGTCTGAAGCC GTGCGCTGATTTAGCCGCCAGCCCGTCTCCATCCTTCAGCTAAAGAGTGCCATTTCCCCCTCCCTACGCTAACCTGCGGCCATGTTTTACGAGGTCGACT
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| DNA Sequence for Gene |
>RU10_RS24770
ATGCACATTCATATTCTGGGTATCTGCGGGACTTTCATGGGCTCGATGGCGGTGTTGGCGAAAGAGCTGGGCCATCACGTGACCGGCTCCGACGCCAACG TCTATCCGCCGATGAGCACGCAGCTCGAGGCCCAGGGCATTCAGCTGACGCAGGGTTATGACCCGGCGCAGCTCGATCCGGCGCCGGATCTGGTGGTGAT CGGCAATGCCATGTCCCGTGGCAACCCGGCGGTGGAATATGTACTGAACAAAGGCCTGCCGTACGTCTCCGGCCCGCAATGGCTGGCCGATCATGTCCTG CAAGGGCGCTGGGTACTGGCCGTTGCCGGTACCCACGGCAAGACCACCACCAGCAGCATGCTCGCCTGGGTGCTGGAACACGCCGGCATGAGCCCGGGTT TCCTCATCGGCGGCGTGCCGCAGAATTTCTCGGTGTCGGCGCGCCTGGGCGGCACACCATTTTTTGTGATCGAGGCTGACGAATACGACAGCGCCTTTTT CGACAAGCGCTCGAAGTTCGTCCACTACCGCCCGCGCACCGCGATCCTCAACAACCTTGAGTTCGATCACGCCGACATCTTTCCCGATCTGCCGGCGATC GAGCGTCAGTTTCATCACTTGGTGCGCACCATTCCGAGCGAAGGGCTGGTCATCCACCCGACCACCGAGCCGGCCTTGCAGCGCGTGATTGAAATGGGTT GCTGGACCCCGGTGCAAACCACCGGTGCCGGCGGTCTGTGGCAGGTCAAGTTGCTCAGCGAAGACGGCTCGGCATTCGAAGTGATGTTCGAAGGTGTGTC GCAAGGCACCGTCGAGTGGGAATTGACCGGTCAGCACAACGTCGCCAATGCCTTGGCTGCTCTGGCTGCGGCGCGGCATGTCGGTGTGGTGCCATCGATG GGCATTGCCGGGTTGAGCGCGTTCAAGAACGTCAAACGCCGTATGGAGAAAGTCGCTGAGGTGCGCGGCATCACCATTTACGACGACTTCGCCCACCATC CGACGGCCATCGCTACTACGCTCGATGGTCTGCGCAAACGTATCGGCGACGCGCCACTGATTGCGATCATCGAGCCGCGCTCCAATTCGATGAAGCTCGG CGCCCACCGTGACGGTTTGCCTGACAGCGTGGTCGATGCCGATCAGGTGATCTGGTACGCCCCGGCCAACCTTGGCTGGGACTTGGCTGCAACCGCTGCG TTGTGCACGGTGCCGTCGATCGTCAGCGATTCGCTGGAAGGCATTATCGAGCGCGTGAAGAGCCAGGCGCAGCCGGGCACCCACGTGGTGATCATGAGCA ACGGTGGCTTCGGCGGCCTGCACGGCAAACTCGCCGAGGCGCTGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACACTTTTTCCCAGGCCGGCGGCCCGGAACGCATCACCCTGGCGATGACCGGCGCCTCGGGCGCGCAGTACGGTTTGCGCCTGCTTGATTGTCTGGTACG CGAAGATCGCGAAGTGCACTTCCTGATCTCCAAGGCTGCGCAACTGGTGATGGCTACCGAGACCGACGTGTCCCTGCCGAACAAACCACAGATGATGCAG GCCTTCCTCACCGAGTACACCGGCGCCGCCGCCGGGCAGATTCGGGTGTATGGCAAGGAAGACTGGATGTCCCCGGTGGCCTCCGGCTCCGGTGCGCCGG CGGCAATGGTGGTGGTGCCGTGCTCGACCGGCACGCTGTCGGCAATTGCCACCGGTGCCTGCAACAACCTCATCGAACGCGCGGCCGATGTCACGCTGAA AGAGCGTCGCCAGTTGATTCTGGTGCCGCGGGAGGCGCCGTACTCGAGCATTCATCTGGAGCACATGCTCAAGCTGTCGAACCTGGGCGTGACCATTTTG
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLEAQGIQLTQGYDPAQLDPAPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGGTPFFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVIEMGCWTPVQTTGAGGLWQVKLLSEDGSAFEVMFEGVSQGTVEWELTGQHNVANALAALAAARHVGVVPSM GIAGLSAFKNVKRRMEKVAEVRGITIYDDFAHHPTAIATTLDGLRKRIGDAPLIAIIEPRSNSMKLGAHRDGLPDSVVDADQVIWYAPANLGWDLAATAA LCTVPSIVSDSLEGIIERVKSQAQPGTHVVIMSNGGFGGLHGKLAEALQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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