Strain | Pseudomonas fluorescens strain MEP34 contig_33, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ATCAGCGCGGCCTGGCTGCCCTGGGCGTCGAGCACCGAATAGAAGTCTTTCTGCTGCCAGGCGCGCTTGCCGAAGGCGTCATAGAACAGTCGCGTTGTCG GTGCGGCCTGGGTGCGTTCGCCGTCGTACACCGGCATCTTGCTCGCGCCACGCGCGGCGCCTTCGCCACTGCCCAGATTGAGCTGGCACGCCGAGTCGTA ACAGGCATGGCAGGCCACGCACTTCTCGGTGAAGATCGGTTGGATGTCCCTGCTGTAGGAAATCGAAGGCGGGATCGCGGGATCTTGCGCCGCGACGCTC CCGCTCAGGACCAGCAACAATAAACTGATGACGCGGTACGGCATGCTGCTGATCCCGAAGGTTAAAAAAAGGCTGCGATTCTACCGTTATAACGCTCGTA CCAACATGAGCGATATTCATGCAAAAGCCGCACGTGCTCTAAAAGCGCACAGGTTTGCTATGATCCCGCTCCTTCGTAATGGTCTTTTCGAGTAGTCCAC
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DNA Sequence for Gene |
>RU10_RS23235
ATGTCCGATCGCAACGTCCGCCTTCAAGCTCTCAAGCAAGCCCTCAAAGAGCGCATCCTGATTCTCGACGGCGGGATGGGCACGATGATCCAGAGCTACA AGCTCGAAGAGCAGGATTATCGCGGCAAGCGCTTCGCCGACTGGCCGAGTGACGTCAAGGGCAACAACGACTTGCTGGTGATCACTCGTCCGGACGTGAT CGGCGGCATCGAAAAAGCCTATCTGGACGCCGGCGCCGACATTCTCGAAACCAACACCTTCAACGCCACGCGCATTTCCATGGCCGATTACGGCATGGAA GAGCTGGCGTACGAGTTAAACGTAGAAGGCGCACGTCTGGCGCGCAAGATTGCCGACGCCAAGACCGCCGAAAACCCGGCCAAGCCGCGCTTCGTCGCCG GTGTGCTCGGCCCGACCAGCCGCACCTGCTCGCTGTCGCCCGACGTCAACAACCCCGGCTACCGCAACGTCACCTTCGATGAGCTGGTGGAAAACTACAC CGAAGCCACCAAGGGCCTGATCGAGGGCGGCGCCGACCTGATCCTGATCGAGACGATCTTCGACACCCTCAACGCCAAAGCGGCGATCTTCGCCGTGCAA GGTGTGTTCGAAGAACTGCACATCGAACTGCCGATCATGATTTCCGGCACGATCACCGACGCCTCCGGCCGCACCCTGTCCGGCCAGACCACCGAAGCGT TCTGGAACTCGGTGGCCCACGCCAAGCCGATTTCCGTGGGCCTGAACTGCGCCCTTGGTGCCAGCGAACTGCGCCCGTACCTGGAAGAGCTGTCGAACAA GGCCAGCACCCACGTTTCCGCGCACCCGAACGCCGGCCTGCCGAATGAATTCGGCGAGTACGACGAACTGCCATCGCAAACCGCGAAAGTCATCGAAGAG TTCGCCCAGAGCGGTTTCCTCAACATCGTCGGCGGCTGCTGCGGCACCACGCCGGGGCACATCGAAGCCATTGCCAAAGCCGTGGCCGGTTATGCACCGC GACAGATTCCGGACATCCCCAAAGCCTGCCGCCTCTCGGGCCTCGAGCCGTTCACCATCGATCGCAGCTCGCTGTTCGTCAACGTCGGCGAGCGCACCAA CATCACCGGTTCGGCAAAGTTCGCCCGGCTGATTCGTGAAGACAACTACACCGAAGCCCTCGAAGTCGCTCTGCAGCAGGTCGAGGCCGGCGCGCAGATC ATCGACATCAACATGGACGAGGGCATGCTCGATTCGAAGAAGGCCATGGTCACCTTCCTCAATCTGATCGCCGGCGAACCGGACATCTCGCGTGTGCCGA TCATGATCGACTCGTCGAAATGGGAAGTCATCGAAGCCGGCCTCAAGTGCATTCAGGGCAAGGGCATCGTCAACTCGATCAGCATGAAAGAAGGCGTCGA GCAGTTCATCCATCACGCCCGACTGTGCAAGCGCTACGGTGCTGCAGTGGTGGTGATGGCGTTCGACGAAGCCGGTCAGGCCGACACCGAAGCGCGCAAG AAAGAGATCTGCAAACGCTCCTACGACATTCTGGTCAATGAAGTCGGCTTCCCGCCGGAAGACATCATCTTCGACCCGAACATCTTCGCCGTCGCCACCG GCATCGAAGAGCACAACAACTACGCCGTCGACTTCATCAATGCCTGCGCCTACATCCGCGACGAGTTGCCGTATGCGCTGAGCTCCGGCGGCGTGTCCAA CGTGTCGTTCTCGTTCCGTGGCAACAACCCGGTGCGTGAGGCGATTCACTCGGTGTTCCTGCTCTACGCGATCCGCGCCGGCCTGACCATGGGCATCGTC AACGCCGGTCAGCTGGAGATCTACGATCAGATCCCGGCGGAGCTGCGCGACGCTGTCGAGGACGTGATCCTCAACCGCACCCCGGACGGCACCGACGCCC TCCTCGCCATTGCCGACAAGTACAAGGGCGACGGCAGCGTCAAGGAAGCCGAGACCGAAGAGTGGCGCAACTGGGACGTCAACAAGCGTCTGGAACACGC GCTGGTCAAGGGCATCACCACGCACATCGTCGAAGACACCGAAGAGTCCCGACAGTCGTTTGCGCGGCCGATCGAAGTGATCGAAGGCCCGTTGATGTCC GGCATGAACATCGTCGGCGACCTGTTCGGCGCCGGCAAAATGTTCCTCCCGCAAGTGGTCAAATCCGCCCGCGTCATGAAGCAGGCCGTAGCCCACTTGA TTCCGTTCATCGAACTGGAAAAAGGCGACAAGCCGGAAGCCAAGGGCAAGATCCTCATGGCCACGGTGAAAGGCGATGTGCACGACATCGGCAAGAACAT CGTTGGCGTGGTGCTTGGCTGCAACGGCTATGACATCGTCGACCTCGGCGTGATGGTCCCGGCCGAGAAGATTCTGCAGGTCGCCAAGGAACAGAAATGC GACATCATCGGCCTCTCCGGCCTGATCACCCCGTCGCTGGATGAAATGGTTCACGTTGCCCGCGAAATGCAGCGCCAGGATTTCCATCTGCCGCTGATGA TCGGTGGCGCGACCACCTCAAAGGCGCACACGGCGGTGAAGATCGAACCGAAGTACAGCAACGACGCGGTGGTCTACGTGACCGATGCCTCGCGCGCCGT GGGTGTGGCGACGCAGTTGCTGTCCAAGGAATTGAAAGCCGGTTTCGTCGAGAAAACCCGTCTGGAATACATCGACGTGCGCGAGCGCACGTCCAATCGC AGCGCCCGCACCGAACGCCTGAGCTATGCCGCCGCGATCGCCAAGAAGCCACAATTCGACTGGGCCAGCTATCAGCCAGTGCAACCGACCTTCACCGGCA GCAAGGTGCTCGACAACATCGATTTGAAGGTGCTGGCTGAATACATCGACTGGACACCGTTTTTCATCTCCTGGGACCTGGCCGGCAAATTCCCGCGCAT CCTCGAGGACGAAGTGGTCGGTGAAGCCGCCACCGCGCTGTACAAGGACGCCCGGGAAATGCTCGCCAAGCTGATCGACGAAAAGCTGATCAGCGCCCGC GCGGTATTCGGTTTCTGGCCGGCCAATCAGGTCAACGAAGACGATATCGAGCTGTACGACGATAACGGCAAGCCGTTGGCCAGGCTGCATCACCTGCGTC AGCAGATCATCAAGACCGACGGCAAACCGAACTTCTGCCTCGCCGACTTCGTTGCGCCGAAGGACAGCGAAGTCACCGATTACGTCGGCGGTTTCATTAC CACTGCCGGCATCGGCGCCGAAGAAGTGGCCAAGGCCTATCAGGACGCTGGCGACGACTACAACTCGATCATGGTCAAGGCCCTCGCCGACCGCTTGGCC GAGGCCTGCGCGGAATGGCTGCACCAGCAAGTGCGCAAAGAGCACTGGGGTTATGCCAAGGACGAAACCCTCGATAACGATGCGCTGATCAAAGAGCAAT ACCGTGGCATCCGCCCCGCTCCCGGCTACCCGGCCTGCCCGGATCACACCGAGAAAGCCGCGCTGTTCACCCTGCTGGACCCGGAAGCGGCCGAAATGCG TGCCGGGCGCAGTGGCGTGTTCCTCACCGAGCACTACGCGATGTTTCCCGCTGCTGCAGTCAGTGGCTGGTACTTCGCCCATCCGCAGGCGCAGTACTTT GCCGTGGGCAAGATCGACAAGGACCAGGTGCAGAGCTACACCGCGCGCAAAGGCCAGGACCTGAGCGTGACCGAGCGCTGGCTGGCGCCGAATCTGGGTT ACGACAGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GATCCATGAGGCCCGACAGCACCTTGCTCCCGGGCCTCATCATTCATCCGCTCACGGGCGCCATGATGGGCCGGGCTGCGGTGAAGAAGGATCAGGTTGT GCCGTGCCTTCGCCCGCCAGTGCCAGACTCTGCATTTGCGCGCGAGACAGTTCTTTCAGCTTTTCAATGCGCGCTTCCGCCAGTTCGATCTCCAGTGCGG CCATCGCCTCCAGGTAGCGGTTACGAGTCGCCTCGCTATCGTCTTTGTCCGGGTAGAGATCCTCGACCTCCTCCTGACGCCGGCTCGCGTTGCTTTCGAG TGTCTCGAATTCCTCGGGGTTGCGCTCGCGCAAATAGCGGATCCAGTAATCGCGACCGATCAGGTCCTCCAGAAACCTGTCCGACGCTTCATCGGCGAGA ACGGCTGCACGCGCATCAATCAACCGCTGCCCGCGAATCGGTGTGGCGTACAGCATGTGCTCTGGTTGCGCCGGCAATTCCAGGCCGTCCGGCCAGCCGC
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Amino Acid Sequence |
>methionine synthase
MSDRNVRLQALKQALKERILILDGGMGTMIQSYKLEEQDYRGKRFADWPSDVKGNNDLLVITRPDVIGGIEKAYLDAGADILETNTFNATRISMADYGME ELAYELNVEGARLARKIADAKTAENPAKPRFVAGVLGPTSRTCSLSPDVNNPGYRNVTFDELVENYTEATKGLIEGGADLILIETIFDTLNAKAAIFAVQ GVFEELHIELPIMISGTITDASGRTLSGQTTEAFWNSVAHAKPISVGLNCALGASELRPYLEELSNKASTHVSAHPNAGLPNEFGEYDELPSQTAKVIEE FAQSGFLNIVGGCCGTTPGHIEAIAKAVAGYAPRQIPDIPKACRLSGLEPFTIDRSSLFVNVGERTNITGSAKFARLIREDNYTEALEVALQQVEAGAQI IDINMDEGMLDSKKAMVTFLNLIAGEPDISRVPIMIDSSKWEVIEAGLKCIQGKGIVNSISMKEGVEQFIHHARLCKRYGAAVVVMAFDEAGQADTEARK KEICKRSYDILVNEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFINACAYIRDELPYALSSGGVSNVSFSFRGNNPVREAIHSVFLLYAIRAGLTMGIV NAGQLEIYDQIPAELRDAVEDVILNRTPDGTDALLAIADKYKGDGSVKEAETEEWRNWDVNKRLEHALVKGITTHIVEDTEESRQSFARPIEVIEGPLMS GMNIVGDLFGAGKMFLPQVVKSARVMKQAVAHLIPFIELEKGDKPEAKGKILMATVKGDVHDIGKNIVGVVLGCNGYDIVDLGVMVPAEKILQVAKEQKC DIIGLSGLITPSLDEMVHVAREMQRQDFHLPLMIGGATTSKAHTAVKIEPKYSNDAVVYVTDASRAVGVATQLLSKELKAGFVEKTRLEYIDVRERTSNR SARTERLSYAAAIAKKPQFDWASYQPVQPTFTGSKVLDNIDLKVLAEYIDWTPFFISWDLAGKFPRILEDEVVGEAATALYKDAREMLAKLIDEKLISAR AVFGFWPANQVNEDDIELYDDNGKPLARLHHLRQQIIKTDGKPNFCLADFVAPKDSEVTDYVGGFITTAGIGAEEVAKAYQDAGDDYNSIMVKALADRLA EACAEWLHQQVRKEHWGYAKDETLDNDALIKEQYRGIRPAPGYPACPDHTEKAALFTLLDPEAAEMRAGRSGVFLTEHYAMFPAAAVSGWYFAHPQAQYF AVGKIDKDQVQSYTARKGQDLSVTERWLAPNLGYDS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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