Pseudomonas fluorescens MEP34, RU10_RS21190
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain MEP34 contig_28, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCGTCAGTCACGGCGACATCTCGGTGCGCCTGAATGCTCGCGACTGCCAGGTCTGCGTGCTGCGCGGCTCGATGCAATTGCAGCCGTTGCACGGCCCG ACGATGGTATTGAAGCAGGGCCAACAAGTCAGCCTGCAAGCGTCTGGTGCCGGCGCGGTGACGGCATTCGATACGTTGATGCCCGGGTGGCGCGACGGCG TGATGATGGCGCAAAACCAGCCGCTGGGTGATTTCCTCCGCGAGTTGAGCCGCTACCGCCCGGGCGTACTGCGCTGGGATCCGGCGCTGGAATCGCTGCG CATCACCGGCAGTTTCCGCCTCGATGACACTGATCAAGTGCTGTCACTGCTGGCGGCAAGTTTGCCCGTCGACGTGCACACGCGAACGCGATTCTGGGTG TCGCTGGTGCCGCGTGCAGAAAAAACTGGCTGAAGCCTGTCCCTTTTTTTCGCCTCGCTGGTCATTCCAGGCAAGTGAACAAAATCGAGAGCTTCTTCCA
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| DNA Sequence for Gene |
>RU10_RS21190
ATGCCCGCAGTATTCCCAGGTCGTTTGCGTCCGTTGTTGCAGTTGAGTCTTTTGCTGAGCCTGAGTGCCAGCCCCGTGTTGATCCAATCGAGCTGGGCCG ATGACGGCAGCCGCCGCAGTTATCAGGTCCCGGCCGGTAGTCTGAGTGCGGCGCTGACGCGGTTCGCCGGTCTGGCCGGAGTCAATCTATCGGTGGACCC GGCGCTGGTCAGCGGCCGCAACAGCAATGGTTTGGCCGGTGAATATGGCGTGGAGGAGGGGTTCAGCCGATTGTTGCTGGGCTCGGGGCTGCAACTGCAA CCGGTCGGCGATCAGGCTTATACGCTGGTACCCGCGGCAGAAGGCAGCACCTTGCAGCTTGCGCCTACATCTATTCTCGGCGCGAGCGGGTCAACCGAGG CCTACGTGTTTGCCGGCGGCCAGGTTGCACGGCGAGGCTCGCAAGGGCTGTTGGGCTCCAGGGATTTCATGGAAACCCCGTTCAGCATGACCACCTACAC CAGCGAAACGGTGAAGAACCAGCAGGCGCGCACGCTCGGCGACCTGATCGGCAGCGACCCTTCGGTACGCGCGACCAACCCGGCCGGCGGACGCTACGAG CAATTCACCATCCGTGGCTTCAGCCTGTTCAACAGCGACGTTTCCTACAACGGCCTCTACGGAATCTTGCCGACGTACACCATCGACATGGAAATGGCTG ATCGCGTCGACATCCTCAAGGGCCCGAGCCAATTGATCAACGGGATTTCGCCACGGGGCAGTGTAGGAGGGGGGATCAACGTCGTGCCGAAACGCGCCAC CGACAAGCCGATAACCTCGCTGACGGCCAACTACGCCTCGAACAACCAGGTCGGTGGCGCGGTGGATGTCGGGCGGCGCTTTGGCGAAGACAATCAGTTC GGCGTGCGCTTCAACGGCGTCAAACAGTCCGGCGATACGGAATGGGATCACCAGAGTGTCGATCGCGACATGGCGGTATTCGGCCTGGATTTCCGTGGCG AACGCTTGCGGCTTTCCACCGATATCGGCCACACCGAACGCGACACCGACGCACCGCAGGAACGCGTGCAAGTCGCCGCCAATGCCAAGGTGCCGAACGC CAATGATGTGCGCGACAACTATGCGCAACCCTGGAGCAAGGCGCGCACCAAAGACACCTTCGGTACGGTGAACGGGGAGTTCGATGTCAGTGATTCGGTC ATGCTGTATGGCGGCGTCGGCGCGCGCAAAAGCAATCACGACTTCTTGCGCCATGCCGTTTCGGTGACTAACTACGCCGGTGATTTCAGCGTCCAGCCGC GAGATTTCACTCGCGACGAAAATGTCCGCACGGCTACCGCTGGCGTTCGTAACTGGTTCCAGACCGGGCCGGTCAGCCATGAAGTGAATCTGGCGGCCAA CTACTTTTATATGGACTTCGAAAACGGCGGCGCCCGTTACGCGGCCGGGCGCAGCAACCTCTACGATCCGGTGGAAATCGCCAGACCCGGCACGCCCACC CGCAATGACGCCAAGGTCTACACCGAGAACCGCTTCAGCGGCGTGGCGTTGTCCGACACCCTCGGTTTCCTCGACGATCGCCTGTTGCTGACCCTGGGGG CGCGTTGGCAGCGGGTCAAAGTCGATGACTGGAGCGACGGCATCAAGGGCGACACGGCCTACGATGAAGAAAAGGTCTCGCCATCGGGCGGCATTCTGTT CAAGGCAACCGACAAACTCTCGCTGTACGCCAACTACATGGAAGGCCTCAGCCAGGGCAAGATCGCACCATCGACATCGATCAACGAGGACGAAATCTTC CCGCCATTCATCAGCCGTCAAGTCGAAGTCGGCGCCAAATACGACGCGGGCTCATATGCGCTGACGGCAGCAGTATTCCGCATCAAACAACCCGCCTACG AAACCAACGCCACTACGCGAGTCTTCGGGCCGAACGGCAAGCGCGAGAACAATGGCGTGGAACTCAGCGTATTCGGCGAACCGCTCAAAGGCTTCAGATT GCTCGGTGGAGTGATGTACATCGATAGCGAATTGACTCACACCACCAACGGAACATTCGACGGCAACCGCGCACCGGCGACACCGAAATACAACGTCAAC CTTGGCGCGGAGTGGGATGTGCCAACGGTGCAGGGCTTGACGTTGACCAGTCGCGGAATCTATTCGAGTTCGCAGTACCTGGACCAATCCAACGACAAGG AAATCGACTCGTGGGAACGGTTCGACGTAGGCACACGCTATGCTTTCAAGCTGGACGAAAAGACGATCACCTTGCGCGCCAATGTCGAAAACGTGCTGGA TAAACGCTACTGGAGCTCGGCGGGTGCTTCAGATGACAGTGAGCCGGGATTGACGCTGTCGACGCCGAGGACGTATCTGCTGTCGGCGACCGTGGATTTC TAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGAGCAGGGGAAATGCATCGAAATTCGCCGATAACACGTTAACTACACTAAATGACCGTTTAGTTGAGCTAACGGAGAATTTAGTTAGATATACGGAGA AAGCCATGATTCAACGTCAGCCGAACTCAACTGATGTGATTGCTGCGCTGAATTTTGAGCCTCATGTTGAAGGCGGTTATTACCGCAGACACTCCGACAT CTTGGATTATTTCCATCGGGGCGACGCCATCGAGTACAACCTGATCCACGCATACGGCTCACTGCAAACGCTGGTGATGAGCAGCGATGTTTTAGCTGGC CGGCAATTTCTGATGCACGTACCGGGCAGGATCTGGAAAGCATCACGATTGCTGGAAGGCTCGAATGGTTTTGGCTTGATCAGCGTAGTTGTATCACCGG GGTTTGAATTCGCGGATCTGGAGATCGGAGATCGTAAAGAACTGACCGCGCGGTTTCCGCAGCATGGAGCGCTGATTGAAGAGCTGACACGTGGTGATGA
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| Amino Acid Sequence |
>TonB-dependent receptor
MPAVFPGRLRPLLQLSLLLSLSASPVLIQSSWADDGSRRSYQVPAGSLSAALTRFAGLAGVNLSVDPALVSGRNSNGLAGEYGVEEGFSRLLLGSGLQLQ PVGDQAYTLVPAAEGSTLQLAPTSILGASGSTEAYVFAGGQVARRGSQGLLGSRDFMETPFSMTTYTSETVKNQQARTLGDLIGSDPSVRATNPAGGRYE QFTIRGFSLFNSDVSYNGLYGILPTYTIDMEMADRVDILKGPSQLINGISPRGSVGGGINVVPKRATDKPITSLTANYASNNQVGGAVDVGRRFGEDNQF GVRFNGVKQSGDTEWDHQSVDRDMAVFGLDFRGERLRLSTDIGHTERDTDAPQERVQVAANAKVPNANDVRDNYAQPWSKARTKDTFGTVNGEFDVSDSV MLYGGVGARKSNHDFLRHAVSVTNYAGDFSVQPRDFTRDENVRTATAGVRNWFQTGPVSHEVNLAANYFYMDFENGGARYAAGRSNLYDPVEIARPGTPT RNDAKVYTENRFSGVALSDTLGFLDDRLLLTLGARWQRVKVDDWSDGIKGDTAYDEEKVSPSGGILFKATDKLSLYANYMEGLSQGKIAPSTSINEDEIF PPFISRQVEVGAKYDAGSYALTAAVFRIKQPAYETNATTRVFGPNGKRENNGVELSVFGEPLKGFRLLGGVMYIDSELTHTTNGTFDGNRAPATPKYNVN LGAEWDVPTVQGLTLTSRGIYSSSQYLDQSNDKEIDSWERFDVGTRYAFKLDEKTITLRANVENVLDKRYWSSAGASDDSEPGLTLSTPRTYLLSATVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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