Pseudomonas fluorescens MEP34, RU10_RS20615
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain MEP34 contig_28, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCGCTCAAGGTGATCAACAAGACTCAGCAGCGCCAGGAGTATCGGTTGAGTCTGGTGGATGGCGATGGGTTTGAATTGCAGGGCAAAACGGAGCTGGGC CTGGCGCCGGGAGAGATTGTCGATGTGCCGGTGTCGGTGGCGATGACTTCAGAGCGCCCGGCCAGTAGTTCACAGACGTTGAGTTTCAGGATTGAAGACA GTGACGAGCCGCAGGTTTACAGCGTGGCGAAGAGCCGCTTTGTGGCGCCGATGAATCGTTGAGGAGCTGGCATTGCTGCCCTCACCCCAGCCCTCTCCCG GAGGCAGAGGGAGCCGACCGAGGTGTCTGTCGCTATACATCGACCTGAAAGACCGAGTCGATTATGGATTCGGCAAAGCACTGTCAGGTCGGCGTATTTC ATCAGCATCCCCCAATCAGTCCCCTCTCCCTCTGGGAGAGGGCTAGGGTGAGGGCTCCTTCCTTGACACCCCACAAAATCAAGTCCACCAAGGCCCACCG
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| DNA Sequence for Gene |
>RU10_RS20615
ATGAAACGCTACGAAAAATTCGCCGATGACATCGCTGAACTGATTCGCTCTGGCGTGCTCGGTCCCGGCCAGCGCGTACCGTCGGTGCGCTATGCCAGCC AGACTTACGGGGTCAGCCCGTCGACGGTGTTCCAGGCCTATTACCTGCTCGAACGCCGCGGCCTGATCCGCGCCCGGCCGCGCTCCGGTTACTTCGTCAA CGCCCATACGCCGAACACGTTCTCCGAGCCGGTCATCAGCAGCCAGGTCAACGAATCAACCGAAGTCGACGTCAGCGAACTGGTGTTCTCGGTACTCGAC TCGATCAAGGATCCGAACACCGTGCCGTTCGGCTCGGCATTCCCCAGCCCGACCCTGTTCCCGCTGCAGCGTCTGTCGCGCTCCCTGGCCAGCGCGGCGC GGGAGATGGACCCGCGCATGGTCGTCACCGACATGTCGCCGGGCAACCCGCAACTGCGTCGACAGATCGCCCTGCGCTACATGGTCGGCGGGCTGATGCT GCCGATGGAAGAATTGCTCATCACCAACGGCGCGCTCGAAGCGCTGAACCTGTGCCTGCAAGCGGTGACCGAGCCCGGTGATCTGGTGGCCATCGAAGCC CCGGCGTTCTACGCCAGCCTGCAGGTGCTTGAGCGTCTGAAGCTCAAAGCGGTGGAGATCCCCGTGCACCCGCGTGACGGCATCGACCTTGGCGTGCTCG CGCAAACCCTGGAACGTCATCCGATCAAAGCCTGCTGGTGCATGACCAGTTTCCAGAATCCGATGGGCGCGAGCATGCCCGAGGCGAAAAAACAGGAACT GGTCGAACTGCTGCGTCAGCATCAGGTGCCGTTGATCGAGGACGATGTCTACGCCGAACTCTATTACGGCCAACAGGCGCCGAAACCGGCCAAGGCCTTC GACACCGAAGGACTGGTCATGCATTGCGGCTCGTTCGCCAAGAGCCTCGCCCCCGGCTATCGCGTTGGCTGGGTCGCCGCAGGGCGTTATGCGCAGAAAG TCGAACGGCTGAAGTTGATGACCTCGCTGTGCGCGTCGATGCCGGCGCAAGCGGCGATCGCCGACTATCTGCAACACGGCGGCTACGATCGGCACCTGCG CAAGCTGCGTTATGCCTTGGAAGAACAGCAGCGCGCGATGCTCGCAGCGATTGCCCGATACTTCCCGGCGCAGACCCGGGTCAGCCAACCGGCGGGCGGC TATTTTCTGTGGCTGGAATTGCCGGAGCAGATGGATTCGCTGAAATTGTTTCAAATGGCGCTGGCACAAGGCATCAGCATCGCGCCGGGGCCGATTTTCT CGCCGACCCAGCGTTTCAGGAATTGTATTCGCTTGAACTACGGCAGCCCGTGGACCGAGGAATCGGAGAAGGCCATGGAGACGTTGGGGCGGATTGTGCG GTCGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGATTATGTGTTGGCCGGGCCATTGCTATCGCGAGCAGGCTCACTCCTACAGTTGGAATGCGATTCCCTTGTAGGAGTGAGCCTGCTCGCGATGGCGCCA AACCAGACAACACAAACCCAAAGCCCTAGCGCCCACCCCCCAAATCAACAAACGTCCCGGTCGCATACGAAGCCTTGTCCGACAGCAACCAGACAATCGC TTCCGCTACTTCATCCGGCCGCCCGCCCCGGGCCATGGGAATCGCCGACTCAAGCTTGCTGACCCGATCCGGATCGCCGCTCAAGGCATGGAAGTCGGTA TAGATGTAGCCCGGACGCACGGCATTAACGCGAATCCCCTCGCCGGCGACTTCCTTGGACAGACCCACCGTGAACGTGTCCAGCGCACCTTTGGACGCGG CGTAGTCGACGTACTCGTTCGGCGAACCGAGGCGTGCGGCGACCGAGGAGACGTTGACGATACTTCCGCCCTGCCCACCATGTTTGGGCGACATGCGCAG
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| Amino Acid Sequence |
>GntR family transcriptional regulator
MKRYEKFADDIAELIRSGVLGPGQRVPSVRYASQTYGVSPSTVFQAYYLLERRGLIRARPRSGYFVNAHTPNTFSEPVISSQVNESTEVDVSELVFSVLD SIKDPNTVPFGSAFPSPTLFPLQRLSRSLASAAREMDPRMVVTDMSPGNPQLRRQIALRYMVGGLMLPMEELLITNGALEALNLCLQAVTEPGDLVAIEA PAFYASLQVLERLKLKAVEIPVHPRDGIDLGVLAQTLERHPIKACWCMTSFQNPMGASMPEAKKQELVELLRQHQVPLIEDDVYAELYYGQQAPKPAKAF DTEGLVMHCGSFAKSLAPGYRVGWVAAGRYAQKVERLKLMTSLCASMPAQAAIADYLQHGGYDRHLRKLRYALEEQQRAMLAAIARYFPAQTRVSQPAGG YFLWLELPEQMDSLKLFQMALAQGISIAPGPIFSPTQRFRNCIRLNYGSPWTEESEKAMETLGRIVRSF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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