Pseudomonas fluorescens MEP34, RU10_RS20240

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain MEP34 contig_28, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGATTGCCGTGGACATGGGCAGCGTTTCGATCAAAGACATGGGCACCGATTCTGCCCCGGGCGCCGGTCGTGTGGCTGCCAACGATTTCAACCTGAAAGT GAACTGCAACGCCGGTACCAAGGTTTCGATGCTGTTCAAACCAACCGTAAACGGCGGTTCGGGCCTGGTTGATGGCAAGAAAGTTCTCAAGCTGCAAGGT ACCGATGCGGCCAAAGGCGTAGGTATCGCGCTGCTGGACAGCAATGGCCAGTTGATCGATCTGAGCTCCGAAGCCACCGCCAAAGTGCAGACCAGCCTGA CTGGCGACGGCACTACTGGCGGCGACGGCACCCTGTCGTTCGCAGCCGCTTACGTCACCACCGGCGACAAGACCGCTGCTACTGCAGGTACCGGTAACGC CACTCTGCCGTTCGTTCTCGAATACGAATAAGCAGCGCGCAATACCTGGACGGGGCCGCTGTGCCCTGTCCTTCCCAGCCTGAATTAATCGGTGAACACT
DNA Sequence for Gene
>RU10_RS20240
ATGTTAAGTCGCTATTTTCCGCTTTGCCTGGGACTTGCCGGAGTGTTGATGACGCACTCGGCATTCGCCAGCATTTCCTTGAGTTCCACCCGGATCATTT TCGACGGCGCGCACAAAGAAGCGAACGTCACCGTGCGCAATGGCGGGCAAACCATTCTGGCGCAATCGTGGCTGGATGCCGGCGACGCCGCTGGCAGCGC GCCACCTTTCGCGGTAACCCCACCGCTGGCCAAACTCGAGCCCAATCAACAGCAGCTGCTGAGGATACTTTATGAGGGCCGCGGCATGCCTGCGGACAAA GAGTCAGTGGTGTGGCTGAACGTGCAGGAAATCCCCCAGGCCAGTGCTGCAGATGTCAATACGCTGCAACTGGCGGTGCGTCAGCGCATCAAGGTTTTCT TCCGCCCGGACGGACTCGCCGGTGACGCCGCAAAGGCGCCGGAGCAACTCGCATGGCAGTTGGTTACACAGGCTGGCAAGTCGATGCTGCAAGTAAAAAA CCAGAGCAATTACCACGTATCGCTGGCAGATCTGAAAATCGCTGCTGGAAAAAAAGCGGAGCTGGTAATTGATTCGACAATGATCGTTCCCGGCGAAGTT CGTTCGTTCGATTTGAAAGATTTGCCACCGGGTTCTCCACGCCTGAGCTTTTCTGCCATTAACGATTACGGCGCACAACAACGATTTGACGCACCACTGA GCGCTACCGAAAGTCATGCCGAGCGCGTGAAAGATGCCTCCGCGCAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CTTCCCCGCCCTACCCTGCCAACTTACAAGCTATTCACAAGTTCCGGACTCCGGTTGAAGCAACACGGACTGATAAGGCAAATTGCATGTTTTCCTCCCA ACACCACACATCTCCAAGTTGTGTTAAGCATCACGTTGCGCGTCAGAAAAACAAAACGGCGTTGGGCTGCCTGCATCCATTGTGCTTTGCAATCAACATG GCCATCTGTGGATTTGCCGTAGGTGCCGAAGCGCCGGCCGCGGTAGCGGGTGAAGCTTTCAATACGTTGTTTCTTGAAGGTTCATCAGCGGTCGATCTGC AACCCTTGTTGAATGCCAACAGCGTACTGCCGGGCCAATATCGCGTTGACGTTTACAGCAACGGCACGCTGGTCGGTCGACGCGACGTTGATTTTGCGGC CAACCCGGTCAACGGCAAAGTCGAACCGCACATCACCCTGGAACTGTTACAGCAGCTGGGTGTGGACATGCGCAAACTGCGTGAGCAAGGTCTGGTTGAC
Amino Acid Sequence
>pilus assembly protein
MLSRYFPLCLGLAGVLMTHSAFASISLSSTRIIFDGAHKEANVTVRNGGQTILAQSWLDAGDAAGSAPPFAVTPPLAKLEPNQQQLLRILYEGRGMPADK ESVVWLNVQEIPQASAADVNTLQLAVRQRIKVFFRPDGLAGDAAKAPEQLAWQLVTQAGKSMLQVKNQSNYHVSLADLKIAAGKKAELVIDSTMIVPGEV RSFDLKDLPPGSPRLSFSAINDYGAQQRFDAPLSATESHAERVKDASAQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site