Strain | Pseudomonas fluorescens strain MEP34 contig_25, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCGAACCAGGCCGCCGGCGATCAGCAGCGGCGCTTCGAGTTCGCGCTGGATCTGGCTGACCTGAGTCTGGGCCAACGAGGTCAGGCGCTGCTCGATCACT TGCTCGAACTGCGCCTGGGTGCGCTGTTGCACCATTTCTTGAGTGCGAGCGCCGGAGAACAGTGCATACAGCACCAGCGCCGCGACCACGCTGAGAACGA TGGCGCCGGCCAGGGCGGCGACGGAAAACTGGATCGACTTGAACTTCATGGGAGCTCCGCACGCAAGAGGACAATCTGCGAGGGATTTATCGGCGGCGCG TGCAGGGCCATGAGAGACGTTGGTCGGAATCGCCGCGCGATGTCGTGGATGGATCGGTGCACGGCGGATTCAATGTGCGTTGAGGAATTTTCACCGCGTC TTGCGGCCATAGGTGAATGTACGCGCAATGCGTCCGGTGTATCTGGCGCCGATACCATTAGCCGCCTAGGATACGCCTCAGGTTTTCAGGGAGTTTTTGA
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DNA Sequence for Gene |
>RU10_RS19860
ATGAACAAGACATTGGTTACAAGTGCACTGAGCGCAGCGCTGTTGCTGGCCGGTTGTCAGTCGGTCAACACCACCAGCGGCGGTGCCGTGGGCGTGGAGC GCAAGCAGTACATGTTCAGCATGCTGTCCTCGCAAGAGGTCGACCAGATGTACGCGCAGTCGTATCAGAAGACCGTCGGCGAGGCGTCGAGCAAAGGTGT GCTGGACAAGACCAGCCCGGAAGCCAAGCGCGTGCAGACCATCGCCAACCGGCTGATCGCCCAGGCACCGACCTTCCGCCCGGACGCGGCGCAGTGGCAG TGGGAAGTCAATCTGATCAAGAGCGATGAGCTCAACGCCAACTGCGGTCCCGGCGGCAAGATCATTTTCTACACCGGGCTGATCGACAGCCTGAAACTCA CCGACGACGAAATTGCCGCGGTCATGGGCCATGAAATCGCCCACGCCCTGCGCGAGCACGGTCGTGAAGCGATGTCCAAGGCTTATGGCATGGAGATGGC GAAGCAGGGCGCTGGTGCCTTGTTCGGGCTGGGTCAGGACAGCCTGGCGCTGGCCGACACCGTGGCCAACTACGGCATGACCTTGCCCAACAGCCGCGCC AACGAAAACGAAGCCGACCTGATCGGCCTGGAACTGGCCGCCCGCGCCGGCTACAACCCGAACGCGGCGATCACCCTGTGGGACAAGATGAGCAAGGCTT CCGAGGGCGCGCCACCGGAATTCATGAGCACTCACCCGGCATCGAGCAGTCGCATTGCGGCGTTGCAGGCAGCCATTCCGAAAGTGATGCCGCTGTACGA AAAAGCCCCAAAATCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ATAAGCAGCTGCAAGCTTCAAGTGGCAAGCTGCAAGTCAAAGCAGGTCCGCTTGGCTTGCAGCTTTTTCTTGAAGCTTGCAGCTAGAAGCTTGCAGCTGC TTCAAACCCATCCACTACTCTGCATGGCCTTGTACACCGCAACAATCGCCAGAATCATGAACGCCGAAGCCGCGAGGCGGCGGATCAGGGTCAGTGGCAG TTTGTCCGCGGCGAAATTACCCGCCAGTACCACCGGCACGTTGGCAATCAACATGCCCACGGTAGTGCCGATGATCACCAGCCACAGTTCCGGGTATTGC GCGGCGAGCATCACGGTGGCGATCTGCGTCTTGTCGCCGATCTCGGCGAGGAAGAACGCAATCAGGGTCGTCAGGAACGGCCCGAACTTGCGCGCCGTGC TGGCTTCGTCGTCATCCATCTTGTCCGGGACCAGAGTCCACAGTGCTGTGGCCGCGAAGCTGGCGGCGAGGATCCAGTGCAGCACGGCGTCGGAGAAGAA
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Amino Acid Sequence |
>peptidase M48
MNKTLVTSALSAALLLAGCQSVNTTSGGAVGVERKQYMFSMLSSQEVDQMYAQSYQKTVGEASSKGVLDKTSPEAKRVQTIANRLIAQAPTFRPDAAQWQ WEVNLIKSDELNANCGPGGKIIFYTGLIDSLKLTDDEIAAVMGHEIAHALREHGREAMSKAYGMEMAKQGAGALFGLGQDSLALADTVANYGMTLPNSRA NENEADLIGLELAARAGYNPNAAITLWDKMSKASEGAPPEFMSTHPASSSRIAALQAAIPKVMPLYEKAPKS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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