Pseudomonas fluorescens MEP34, RU10_RS17680 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain MEP34 contig_23, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCGCCCATGTCTTCGATTGTATGCCTGGCAACTTCGCGATTTGACGCGACACATCAAATCTGCAAGCGAACCCTTATCAAGCGCAACGAGCCAATGC AGATGGTCTGGCATGACGACCCAAGCCAGAGAGGTAGCTAACCCGGCTTCACTGCATCGTCTCAACTCGTTGACCAGCAATCTACCGTCGTGCCAGTTGG TGAAAACACGCTCACGTTGATTAACCACTGCTGTAAGCAGATAAATTCTTCCGGTTTCAGAGTACCGACCCTTTCTCAGACGACAGGCTTTTGCAGCAGC AGGCATTCCATTGCCTCCCTTTCAAGATCCTGAAAAAACCTTAGCGTCTGCACCCTGTTTAGCCAGCCCGGGCAATTACTGGATGTGTCGTTACAAGCCC CAGCCGCTCCATCCGTCCGGGGCTTTTTTACGTCGATTGAATTTTTCCGCCGCCGTGTCGCTCTTCTGCATAACAGAACCCGTCTGCCATCGGTGTGCTC
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| DNA Sequence for Gene |
>RU10_RS17680
|ligD
ATGAACAGGAACCTCGACGATTACAACCGCATGCGTGATTTTTCTGCGACTTCGGAACCGGCTGCGGTCAAGCGCCCGGGGCGCAAGTCTGCCAAGGACC ATGCTTTGCAGTTCTGCATCCAGAAGCACGATGCTTCGCACCTGCATTACGACTTTCGCCTGGAACTCGATGGCGCGCTGAAGAGCTGGGCGGTGCCGAA GGGGCCGTCGCTGGATCCCAAGGTCAAGCGCCTGGCGATCCATGTCGAGGATCATCCGCTCGATTACGCGACGTTCGAGGGCAGCATTCCCGAGGGGCAT TACGGCGCCGGCGATGTGATCGTCTGGGATCGCGGCGTGTGGATTCCGCTGGAGGATCCGCACAAGGCCTATGCCAAGGGTCGGCTCAAGTTCGAGTTGC AGGGCGAGAAGCTCGGCGGCGTGTGGAATCTGGTGCGCACGCACATGCCGGGCAAGAAAGAACAATGGTTTCTGATCAAGCATCAGGACAATGCCGCGCG CCCGCAGGATGACTTCGACGTGCTGGTCGCCGAACCCGACAGCGTGCTCAGTGAGAGCACGATTGTCGGCAAACCCACGCTCGCCGCCGAACAGGCCAAA CCGCTGAAGACGGCCCCGGCCAAGCCACGCAAACAGGCGTCTGGACAGCTTAATGGCGCGCGCAAGGCCAAGCTGCCGGCGTTGATCAAACCGGAACTGG CCACATTGGTCGATAGCGCGCCAGAAGGGCAATGGAGCTACGAGATCAAGTTCGATGGCTATCGGATCATGGCGCGGATCGATCACGATGAGGTCCAGCT GTTCACCCGCAATGGCCACGACTGGACGCATAAACTGCCGCAGCAGGCCAAGGCGCTGGCGGCACTGGGCCTTGAATCGGCGTGGCTTGACGGCGAAATG GTCGTGGCCAACGAGCAGGGTGTGCCGGATTTTCAGGCGCTGCAAAATGCCTTCGATGCCGGACGCAGCGGCAACATCGTTTATTACCTGTTCGACGTGC CGTACCTTAACGGCGTCGACCTGCGTGATGTTCCGGTTGAAGAGCGGCGTGCGGCGCTGAGCACGATCCTTGGCGCACAGAAAGATTCTTCACCGCTGCG CTTCTCCGAAGCCTTCGAAGAAACTCCCGACGCACTGCTCAACAGCGCCTGCCAGATGCAGATGGAAGGCCTGATCGGCAAGCGCCTCGGTTCGCCCTAC GTGTCGCGGCGGAGTGGCGACTGGATCAAGCTTAAATGCAAGCATCGGCAAGAGTTCGTCATCGTCGGCTATACCGATCCGAAGGGTGCGCGCAGTGCCT TCGGCGCTTTGCTGCTCGGTCTGCACGACGGTGACAGCGGCGAGTTGCGCTATGCCGGCAAGGTTGGCACCGGGTTCAATGAAACCACGTTGAAAAGCAT CCTCGCCCAGCTCAAGCCGCTACAGACCAAAAGCGCTGCGGTGGTCAATCCGCCCAGTGGTTTCGAGGCCAAGGGCGTGCACTGGCTGAAACCGAAATTG CTGGCGGAGGTGGCGTTCGCCGAGATGACCAAGGACGGCTCGGTGCGGCACGCCGTGTTCCATGGTTTGCGTGATGACAAACCGGCCAAGGACATTACAG AGGAGCGAGCGAAGCCTGTGAAAGCTGCCAAGTCTGAAAAATCCGAGAAGACCGAAAACACCAAAACCACCGAAAAAACCAAAACCGCCGCCAGGCAACC AGCGAAGAAAACCGCCGCCAGCAAAGCCGAAACCGCACCGTCGCAGGCGGGGCTGGCCGGCGGCAAGGTGCGCATCACGCACCCGGATCGGGTGATCGAT GCAGTCAGCGGCACCACCAAGATGCAACTCGCGCAGTATTACGCCAGCGTTGCTGAACACATCCTCCCGCAACTCAAGGATCGCCCCGTGGCATTGGTGC GCGCGCCGGATGGCATTGCCGGCGAACTGTTCTTTCAGAAGAACGCCGAACGCCTGGCCATTCCCGGGATTTCGACACTGGACAAGGACGTCACCGGCCA GCCAGTGATGATGATCAACAACCCCGAAGCGCTGGTCGGGGCGGTGCAGATGAGCACGGTGGAGCTGCACACCTGGAACGCCACGACGGTGGATCTGGAC AAGCCCGATCGCTTCGTCCTCGACCTCGACCCGGATCCGGCGTTGCCATGGAAAAGCATGGTAGAAGCCACCGCGCTGACCCTCACCGTGCTCGATGAAC TGGGACTCAAAGCCTTCCTGAAAACCAGTGGCGGCAAAGGCATTCACCTGGTGGTGCCCTTGACGCGCAAGCACGGCTGGGACGAAGTGAAGGACTTCAG CCACGCCATCGTCAGCCACATGGCCAAGTTGCTGCCGGATCGTATTTCGGCGGTGTCCGGACCGAAAAACCGTGTCGGGCGGATCTTTATCGATTACCTG CGCAACGGCCTCGGCGCCACCACCATCTGCGCCTATGCCGCACGGGCGCGGGAAGGCATGCCGGTTTCCGTGCCGCTGTACCGAGAGGAGGTCGCGGAAA TCAAGGGCGGTAATCACTGGAACATTTACAACGTGCACGAGCGTCTGACCGAAGTCGGCGATGAGCCTTGGGCGGACATGAAGAAAACCCGTCAGACCAT TACCGCCGAGATGCGCAAGCGCGTCGGCATGAAAAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGGTGTCGCGCAGCAAGTCGTGGGCGTTGAGCAGTTCGAAGGCGATTTGCGGGTGTTTTTCCAGACCCTTGCGAATCGCCGCCGGGATCGCCGCACGG GTTTTTCGACACAGCCCCGGCAAGTCGTCGATCTGAATGGCAATGCCGCGCATGGTGCGTACCTCGTTAAAACCCGGTGCGACGTCGACGCGGATGCCCA ACTGCTCATACATGCGCTGTTGCAGACGTTTGAGGTCGTCGAGGTCTTTGAGTTGTTCCAGGCGCGCCAGGAGGATTTTTTCCTCTGCGCGAGTCAGGCG CAGGATGCGCAGATCCGCTCCGGGCGTTTCAAGCAAGGGATCGCGCCCGCAGATGCAGGCGCCGGGTGGGCAGGGTGAGCGCAAGGGCACGGTGGTCGTC ATGGCCTCCATCATAGAGGCCGTCGGACGTTTTTGCCTATGCGCACTCAGCGGCCGTCCATCGGCCGCTGTATCCCTCGTGACTACTGGTGCACGCCTTC
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MNRNLDDYNRMRDFSATSEPAAVKRPGRKSAKDHALQFCIQKHDASHLHYDFRLELDGALKSWAVPKGPSLDPKVKRLAIHVEDHPLDYATFEGSIPEGH YGAGDVIVWDRGVWIPLEDPHKAYAKGRLKFELQGEKLGGVWNLVRTHMPGKKEQWFLIKHQDNAARPQDDFDVLVAEPDSVLSESTIVGKPTLAAEQAK PLKTAPAKPRKQASGQLNGARKAKLPALIKPELATLVDSAPEGQWSYEIKFDGYRIMARIDHDEVQLFTRNGHDWTHKLPQQAKALAALGLESAWLDGEM VVANEQGVPDFQALQNAFDAGRSGNIVYYLFDVPYLNGVDLRDVPVEERRAALSTILGAQKDSSPLRFSEAFEETPDALLNSACQMQMEGLIGKRLGSPY VSRRSGDWIKLKCKHRQEFVIVGYTDPKGARSAFGALLLGLHDGDSGELRYAGKVGTGFNETTLKSILAQLKPLQTKSAAVVNPPSGFEAKGVHWLKPKL LAEVAFAEMTKDGSVRHAVFHGLRDDKPAKDITEERAKPVKAAKSEKSEKTENTKTTEKTKTAARQPAKKTAASKAETAPSQAGLAGGKVRITHPDRVID AVSGTTKMQLAQYYASVAEHILPQLKDRPVALVRAPDGIAGELFFQKNAERLAIPGISTLDKDVTGQPVMMINNPEALVGAVQMSTVELHTWNATTVDLD KPDRFVLDLDPDPALPWKSMVEATALTLTVLDELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMAKLLPDRISAVSGPKNRVGRIFIDYL RNGLGATTICAYAARAREGMPVSVPLYREEVAEIKGGNHWNIYNVHERLTEVGDEPWADMKKTRQTITAEMRKRVGMKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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